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      Structural basis for placental malaria mediated by Plasmodium falciparum VAR2CSA

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          Abstract

          Plasmodium falciparum VAR2CSA binds to chondroitin sulfate A (CSA) on the surface of the syncytiotrophoblast during placental malaria. This interaction facilitates placental sequestration of malaria parasites resulting in severe health outcomes for both the mother and her offspring. Furthermore, CSA is presented by diverse cancer cells and specific targeting of cells by VAR2CSA may become a viable approach for cancer treatment. Here, we determined the Cryo-EM structures of the full-length ectodomain of VAR2CSA from P. falciparum strain NF54 in complex with CSA, and VAR2CSA from a second P. falciparum strain FCR3. The architecture of VAR2CSA is composed of a stable core flanked by a flexible arm. CSA traverses the core domain by binding within two channels and CSA binding does not induce major conformational changes in VAR2CSA. The CSA-binding elements are conserved across VAR2CSA variants and are flanked by polymorphic segments, suggesting immune selection outside the CSA-binding sites. This work provides paths for developing interventions against placental malaria and cancer.

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          Most cited references80

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          UCSF Chimera--a visualization system for exploratory research and analysis.

          The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provide most higher level functionality. This architecture ensures that the extension mechanism satisfies the demands of outside developers who wish to incorporate new features. Two unusual extensions are presented: Multiscale, which adds the ability to visualize large-scale molecular assemblies such as viral coats, and Collaboratory, which allows researchers to share a Chimera session interactively despite being at separate locales. Other extensions include Multalign Viewer, for showing multiple sequence alignments and associated structures; ViewDock, for screening docked ligand orientations; Movie, for replaying molecular dynamics trajectories; and Volume Viewer, for display and analysis of volumetric data. A discussion of the usage of Chimera in real-world situations is given, along with anticipated future directions. Chimera includes full user documentation, is free to academic and nonprofit users, and is available for Microsoft Windows, Linux, Apple Mac OS X, SGI IRIX, and HP Tru64 Unix from http://www.cgl.ucsf.edu/chimera/. Copyright 2004 Wiley Periodicals, Inc.
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            cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

            A software tool, cryoSPARC, addresses the speed bottleneck in cryo-EM image processing, enabling automated macromolecular structure determination in hours on a desktop computer without requiring a starting model.
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              Is Open Access

              <i>Coot</i> : model-building tools for molecular graphics

              Acta Crystallographica Section D Biological Crystallography, 60(12), 2126-2132
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                Author and article information

                Journal
                101674869
                44774
                Nat Microbiol
                Nat Microbiol
                Nature microbiology
                2058-5276
                31 December 2020
                15 January 2021
                March 2021
                15 July 2021
                : 6
                : 3
                : 380-391
                Affiliations
                [1 ]Host-Pathogen Interactions and Structural Vaccinology Section, Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
                [2 ]Laboratory of Membrane Proteins and Structural Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA
                [3 ]Laboratory of Cell Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
                [4 ]Vaccine Development Unit, Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
                [5 ]Section on Integrative Biophysics, Division of Basic and Translational Biophysics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, USA
                [6 ]Pathogenesis and Immunity Section, Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA
                Author notes

                Author contributions

                N.H.T. conceived the study, designed and supervised research. R.M. designed and carried out all experiments and data analysis. J.P.R with support from P.E.D., cloned the original expression plasmids to generate a panel of full-length VAR2CSA variants. T.L. assisted with grid freezing, Cryo-EM data collection and data processing of crosslinked VAR2CSA FCR3. R.H assisted with Cryo-EM data collection of VAR2CSA FCR3 and VAR2CSA NF54 CSA complex. J.D.P. and J.Z. help with the negative stain studies. R.M. and N.H.T. interpreted the data and wrote the manuscript, with input from all authors.

                [* ]Correspondence: niraj.tolia@ 123456nih.gov (N.H.T.)
                Article
                NIHMS1656125
                10.1038/s41564-020-00858-9
                7914210
                33452495
                aaa8e814-847f-41ff-a2fb-798ce11e686a

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