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      Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

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          Abstract

          We challenge the view that our species, Homo sapiens, evolved within a single population and/or region of Africa. The chronology and physical diversity of Pleistocene human fossils suggest that morphologically varied populations pertaining to the H. sapiens clade lived throughout Africa. Similarly, the African archaeological record demonstrates the polycentric origin and persistence of regionally distinct Pleistocene material culture in a variety of paleoecological settings. Genetic studies also indicate that present-day population structure within Africa extends to deep times, paralleling a paleoenvironmental record of shifting and fractured habitable zones. We argue that these fields support an emerging view of a highly structured African prehistory that should be considered in human evolutionary inferences, prompting new interpretations, questions, and interdisciplinary research directions.

          Highlights

          The view that Homo sapiens evolved from a single region/population within Africa has been given primacy in studies of human evolution.

          However, developments across multiple fields show that relevant data are no longer consistent with this view.

          We argue instead that Homo sapiens evolved within a set of interlinked groups living across Africa, whose connectivity changed through time.

          Genetic models therefore need to incorporate a more complex view of ancient migration and divergence in Africa.

          We summarize this new framework emphasizing population structure, outline how this changes our understanding of human evolution, and identify new research directions.

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          Most cited references72

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          The genetic structure and history of Africans and African Americans.

          Africa is the source of all modern humans, but characterization of genetic variation and of relationships among populations across the continent has been enigmatic. We studied 121 African populations, four African American populations, and 60 non-African populations for patterns of variation at 1327 nuclear microsatellite and insertion/deletion markers. We identified 14 ancestral population clusters in Africa that correlate with self-described ethnicity and shared cultural and/or linguistic properties. We observed high levels of mixed ancestry in most populations, reflecting historical migration events across the continent. Our data also provide evidence for shared ancestry among geographically diverse hunter-gatherer populations (Khoesan speakers and Pygmies). The ancestry of African Americans is predominantly from Niger-Kordofanian (approximately 71%), European (approximately 13%), and other African (approximately 8%) populations, although admixture levels varied considerably among individuals. This study helps tease apart the complex evolutionary history of Africans and African Americans, aiding both anthropological and genetic epidemiologic studies.
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            Genomic insights into the origin of farming in the ancient Near East

            We report genome-wide ancient DNA from 44 ancient Near Easterners ranging in time between ~12,000-1,400 BCE, from Natufian hunter-gatherers to Bronze Age farmers. We show that the earliest populations of the Near East derived around half their ancestry from a ‘Basal Eurasian’ lineage that had little if any Neanderthal admixture and that separated from other non-African lineages prior to their separation from each other. The first farmers of the southern Levant (Israel and Jordan) and Zagros Mountains (Iran) were strongly genetically differentiated, and each descended from local hunter-gatherers. By the time of the Bronze Age, these two populations and Anatolian-related farmers had mixed with each other and with the hunter-gatherers of Europe to drastically reduce genetic differentiation. The impact of the Near Eastern farmers extended beyond the Near East: farmers related to those of Anatolia spread westward into Europe; farmers related to those of the Levant spread southward into East Africa; farmers related to those from Iran spread northward into the Eurasian steppe; and people related to both the early farmers of Iran and to the pastoralists of the Eurasian steppe spread eastward into South Asia.
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              African climate change and faunal evolution during the Pliocene–Pleistocene

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                Author and article information

                Contributors
                Journal
                Trends Ecol Evol
                Trends Ecol. Evol. (Amst.)
                Trends in Ecology & Evolution
                Elsevier Science Publishers
                0169-5347
                1872-8383
                1 August 2018
                August 2018
                : 33
                : 8
                : 582-594
                Affiliations
                [1 ]School of Archaeology, University of Oxford, South Parks Road, Oxford OX1 3TG, UK
                [2 ]Department of Archaeology, Max Planck Institute for the Science of Human History, Kahlaische Street 10, D-07745 Jena, Germany
                [3 ]Research Department of Genetics, Evolution and Environment, and University College London (UCL) Genetics Institute, University College London, Gower Street, London WC1E 6BT, UK
                [4 ]Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
                [5 ]Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D-04103 Leipzig, Germany
                [6 ]Department of Archaeology, University of Cambridge, Pembroke Street, Cambridge, CB2 3DZ, UK
                [7 ]Department of Anthropology, University of Western Ontario, London, ON, N6A 3K7, Canada
                [8 ]Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK
                [9 ]Department of Archaeology, Classics and Egyptology, University of Liverpool, 12-14 Abercromby Square, Liverpool L69 7WZ, UK
                [10 ]Center for Climate Physics, Institute for Basic Science, Busan, South Korea
                [11 ]Pusan National University, Busan, South Korea
                [12 ]Department of Human Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
                [13 ]Centre National de la Recherche Scientifique (CNRS) Unité Mixte de Recherche (UMR) 5199 PACEA (De la Préhistoire à l'actuel: Culture, Environnement et Anthropologie), Université de Bordeaux, Bâtiment B18, Allée Geoffroy Saint Hilaire, CS 50023, F-33615 Pessac CEDEX, France
                [14 ]Senter for Fremragende Forskning (SFF) Centre for Early Sapiens Behaviour (SapienCE), University of Bergen, Øysteinsgate 3, Postboks 7805, 5020, Bergen, Norway
                [15 ]Department of Anthropology, Harvard University, Cambridge, MA 02138, USA
                [16 ]Geography, King’s College London, Strand, London, WC2R 2LS, UK
                [17 ]Department of Anthropology, Center for Advanced Study of Hominid Paleobiology, The George Washington University, 2110 G Street North West, Washington, DC 20052, USA
                [18 ]Department of Archaeology, University of Exeter, Exeter, UK
                [19 ]Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK
                [20 ]Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK
                [21 ]Department of Anthropology and the Genome Center, University of California, Davis, CA 95616 USA
                [22 ]Department of Earth and Environmental Sciences, Columbia University, Lamont-Doherty Earth Observatory, 61 Route 9 West, Palisades, NY 10964-1000, USA
                [23 ]Department of Anthropology, Emory University, 1557 Dickey Drive, Atlanta, GA 30322, USA
                [24 ]Laboratoire Évolution & Diversité Biologique (EDB UMR 5174), Université de Toulouse Midi-Pyrénées, CNRS, IRD, UPS. 118 route de Narbonne, Bat 4R1, 31062 Toulouse cedex 9, France
                [25 ]Instituto Gulbenkian de Ciência, P-2780-156, Oeiras, Portugal
                Author notes
                Article
                S0169-5347(18)30117-4
                10.1016/j.tree.2018.05.005
                6092560
                30007846
                ab57c60c-6ad9-4b9f-8c4c-98c68084ae39
                © 2018 The Author(s)

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

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                Categories
                Article

                Ecology
                human evolution,evolutionary genetics,paleoanthropology,paleoecology,middle stone age,african origins

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