12
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Diverse Defenses: A Perspective Comparing Dipteran Piwi-piRNA Pathways

      review-article
      1 , 2 , 1 , 3 , *
      Cells
      MDPI
      transposons, piRNA, Drosophilids, mosquitoes

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Animals face the dual threat of virus infections hijacking cellular function and transposons proliferating in germline genomes. For insects, the deeply conserved RNA interference (RNAi) pathways and other chromatin regulators provide an important line of defense against both viruses and transposons. For example, this innate immune system displays adaptiveness to new invasions by generating cognate small RNAs for targeting gene silencing measures against the viral and genomic intruders. However, within the Dipteran clade of insects, Drosophilid fruit flies and Culicids mosquitoes have evolved several unique mechanistic aspects of their RNAi defenses to combat invading transposons and viruses, with the Piwi-piRNA arm of the RNAi pathways showing the greatest degree of novel evolution. Whereas central features of Piwi-piRNA pathways are conserved between Drosophilids and Culicids, multiple lineage-specific innovations have arisen that may reflect distinct genome composition differences and specific ecological and physiological features dividing these two branches of Dipterans. This perspective review focuses on the most recent findings illuminating the Piwi/piRNA pathway distinctions between fruit flies and mosquitoes, and raises open questions that need to be addressed in order to ameliorate human diseases caused by pathogenic viruses that mosquitoes transmit as vectors.

          Related collections

          Most cited references298

          • Record: found
          • Abstract: found
          • Article: not found

          Evolution of genes and genomes on the Drosophila phylogeny.

          Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing more robust results than single-genome analyses can provide. The genomes of 12 Drosophila species, ten of which are presented here for the first time (sechellia, simulans, yakuba, erecta, ananassae, persimilis, willistoni, mojavensis, virilis and grimshawi), illustrate how rates and patterns of sequence divergence across taxa can illuminate evolutionary processes on a genomic scale. These genome sequences augment the formidable genetic tools that have made Drosophila melanogaster a pre-eminent model for animal genetics, and will further catalyse fundamental research on mechanisms of development, cell biology, genetics, disease, neurobiology, behaviour, physiology and evolution. Despite remarkable similarities among these Drosophila species, we identified many putatively non-neutral changes in protein-coding genes, non-coding RNA genes, and cis-regulatory regions. These may prove to underlie differences in the ecology and behaviour of these diverse species.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.

            The Zika outbreak, spread by the Aedes aegypti mosquito, highlights the need to create high-quality assemblies of large genomes in a rapid and cost-effective way. Here we combine Hi-C data with existing draft assemblies to generate chromosome-length scaffolds. We validate this method by assembling a human genome, de novo, from short reads alone (67× coverage). We then combine our method with draft sequences to create genome assemblies of the mosquito disease vectors Aeaegypti and Culex quinquefasciatus, each consisting of three scaffolds corresponding to the three chromosomes in each species. These assemblies indicate that almost all genomic rearrangements among these species occur within, rather than between, chromosome arms. The genome assembly procedure we describe is fast, inexpensive, and accurate, and can be applied to many species.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Small silencing RNAs: an expanding universe.

              Since the discovery in 1993 of the first small silencing RNA, a dizzying number of small RNA classes have been identified, including microRNAs (miRNAs), small interfering RNAs (siRNAs) and Piwi-interacting RNAs (piRNAs). These classes differ in their biogenesis, their modes of target regulation and in the biological pathways they regulate. There is a growing realization that, despite their differences, these distinct small RNA pathways are interconnected, and that small RNA pathways compete and collaborate as they regulate genes and protect the genome from external and internal threats.
                Bookmark

                Author and article information

                Journal
                Cells
                Cells
                cells
                Cells
                MDPI
                2073-4409
                27 September 2020
                October 2020
                : 9
                : 10
                : 2180
                Affiliations
                [1 ]Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, CA 92093, USA; sgamez@ 123456ucsd.edu (S.G.); oakbari@ 123456ucsd.edu (O.S.A.)
                [2 ]Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853-2703, USA; sps257@ 123456cornell.edu
                [3 ]Department of Biochemistry and Genome Science Institute, Boston University School of Medicine, Boston, MA 02118, USA
                Author notes
                [* ]Correspondence: nclau@ 123456bu.edu
                Author information
                https://orcid.org/0000-0003-0665-0066
                https://orcid.org/0000-0002-1026-999X
                Article
                cells-09-02180
                10.3390/cells9102180
                7601171
                32992598
                ac9cb404-d8df-40b1-b5af-1cd428864d8c
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 02 September 2020
                : 23 September 2020
                Categories
                Review

                transposons,pirna,drosophilids,mosquitoes
                transposons, pirna, drosophilids, mosquitoes

                Comments

                Comment on this article