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      Molecular Characterization of a Novel Cold-Active Hormone-Sensitive Lipase ( HaHSL) from Halocynthiibacter Arcticus

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          Abstract

          Bacterial hormone-sensitive lipases (bHSLs), which are homologous to the catalytic domains of human HSLs, have received great interest due to their uses in the preparation of highly valuable biochemicals, such as drug intermediates or chiral building blocks. Here, a novel cold-active HSL from Halocynthiibacter arcticus ( HaHSL) was examined and its enzymatic properties were investigated using several biochemical and biophysical methods. Interestingly, HaHSL acted on a large variety of substrates including tertiary alcohol esters and fish oils. Additionally, this enzyme was highly tolerant to high concentrations of salt, detergents, and glycerol. Furthermore, immobilized HaHSL retained its activity for up to six cycles of use. Homology modeling suggested that aromatic amino acids (Trp 23, Tyr 74, Phe 78, Trp 83, and Phe 245) in close proximity to the substrate-binding pocket were important for enzyme activity. Mutational analysis revealed that Tyr 74 played an important role in substrate specificity, thermostability, and enantioselectivity. In summary, the current study provides an invaluable insight into the novel cold-active HaHSL from H. arcticus, which can be efficiently and sustainably used in a wide range of biotechnological applications.

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          Most cited references31

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          Clustal Omega for making accurate alignments of many protein sequences.

          Clustal Omega is a widely used package for carrying out multiple sequence alignment. Here, we describe some recent additions to the package and benchmark some alternative ways of making alignments. These benchmarks are based on protein structure comparisons or predictions and include a recently described method based on secondary structure prediction. In general, Clustal Omega is fast enough to make very large alignments and the accuracy of protein alignments is high when compared to alternative packages. The package is freely available as executables or source code from www.clustal.org or can be run on-line from a variety of sites, especially the EBI www.ebi.ac.uk.
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            ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.

            The fortran program ESPript was created in 1993, to display on a PostScript figure multiple sequence alignments adorned with secondary structure elements. A web server was made available in 1999 and ESPript has been linked to three major web tools: ProDom which identifies protein domains, PredictProtein which predicts secondary structure elements and NPS@ which runs sequence alignment programs. A web server named ENDscript was created in 2002 to facilitate the generation of ESPript figures containing a large amount of information. ENDscript uses programs such as BLAST, Clustal and PHYLODENDRON to work on protein sequences and such as DSSP, CNS and MOLSCRIPT to work on protein coordinates. It enables the creation, from a single Protein Data Bank identifier, of a multiple sequence alignment figure adorned with secondary structure elements of each sequence of known 3D structure. Similar 3D structures are superimposed in turn with the program PROFIT and a final figure is drawn with BOBSCRIPT, which shows sequence and structure conservation along the Calpha trace of the query. ESPript and ENDscript are available at http://genopole.toulouse.inra.fr/ESPript.
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              Protein-inorganic hybrid nanoflowers.

              Flower-shaped inorganic nanocrystals have been used for applications in catalysis and analytical science, but so far there have been no reports of 'nanoflowers' made of organic components. Here, we report a method for creating hybrid organic-inorganic nanoflowers using copper (II) ions as the inorganic component and various proteins as the organic component. The protein molecules form complexes with the copper ions, and these complexes become nucleation sites for primary crystals of copper phosphate. Interaction between the protein and copper ions then leads to the growth of micrometre-sized particles that have nanoscale features and that are shaped like flower petals. When an enzyme is used as the protein component of the hybrid nanoflower, it exhibits enhanced enzymatic activity and stability compared with the free enzyme. This is attributed to the high surface area and confinement of the enzymes in the nanoflowers.
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                Author and article information

                Journal
                Biomolecules
                Biomolecules
                biomolecules
                Biomolecules
                MDPI
                2218-273X
                05 November 2019
                November 2019
                : 9
                : 11
                : 704
                Affiliations
                [1 ]Department of Chemistry, College of Natural Science, Sookmyung Women’s University, Seoul 04310, Korea; ly.12000532@ 123456gmail.com (L.T.H.L.L.); vlqkshqk61@ 123456outlook.kr (W.Y.); yingaabb@ 123456gmail.com (Y.W.); sangeun94@ 123456sookmyung.ac.kr (S.J.)
                [2 ]Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Korea; kyeongkyu@ 123456skku.edu
                [3 ]Department of Polar Sciences, University of Science and Technology (UST), Incheon 21990, Korea; justay@ 123456kopri.re.kr (C.L.); junhyucklee@ 123456kopri.re.kr (J.H.L.)
                [4 ]Unit of Research for Practical Application, Korea Polar Research Institute (KOPRI), Incheon 21990, Korea
                Author notes
                [* ]Correspondence: doohunkim@ 123456sookmyung.ac.kr ; Tel.: +82-2-2077-7806
                Author information
                https://orcid.org/0000-0003-2515-8894
                Article
                biomolecules-09-00704
                10.3390/biom9110704
                6921082
                31694309
                ad8e992f-ebb3-43aa-b1c3-5b2a6912e0ca
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 14 October 2019
                : 31 October 2019
                Categories
                Article

                hormone-sensitive lipase,substrate specificity,enantioselectivity,immobilization,halocynthiibacter arcticus

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