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      Ancient Antimicrobial Peptides Kill Antibiotic-Resistant Pathogens: Australian Mammals Provide New Options

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          Abstract

          Background

          To overcome the increasing resistance of pathogens to existing antibiotics the 10× '20 Initiative declared the urgent need for a global commitment to develop 10 new antimicrobial drugs by the year 2020. Naturally occurring animal antibiotics are an obvious place to start. The recently sequenced genomes of mammals that are divergent from human and mouse, including the tammar wallaby and the platypus, provide an opportunity to discover novel antimicrobials. Marsupials and monotremes are ideal potential sources of new antimicrobials because they give birth to underdeveloped immunologically naïve young that develop outside the sterile confines of a uterus in harsh pathogen-laden environments. While their adaptive immune system develops innate immune factors produced either by the mother or by the young must play a key role in protecting the immune-compromised young. In this study we focus on the cathelicidins, a key family of antimicrobial peptide genes.

          Principal Finding

          We identified 14 cathelicidin genes in the tammar wallaby genome and 8 in the platypus genome. The tammar genes were expressed in the mammary gland during early lactation before the adaptive immune system of the young develops, as well as in the skin of the pouch young. Both platypus and tammar peptides were effective in killing a broad range of bacterial pathogens. One potent peptide, expressed in the early stages of tammar lactation, effectively killed multidrug-resistant clinical isolates of Pseudomonas aeruginosa, Klebsiella pneumoniae and Acinetobacter baumannii.

          Conclusions and Significance

          Marsupial and monotreme young are protected by antimicrobial peptides that are potent, broad spectrum and salt resistant. The genomes of our distant relatives may hold the key for the development of novel drugs to combat multidrug-resistant pathogens.

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          Most cited references68

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          Profile hidden Markov models.

          S. Eddy (1998)
          The recent literature on profile hidden Markov model (profile HMM) methods and software is reviewed. Profile HMMs turn a multiple sequence alignment into a position-specific scoring system suitable for searching databases for remotely homologous sequences. Profile HMM analyses complement standard pairwise comparison methods for large-scale sequence analysis. Several software implementations and two large libraries of profile HMMs of common protein domains are available. HMM methods performed comparably to threading methods in the CASP2 structure prediction exercise.
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            ProtTest: selection of best-fit models of protein evolution.

            Using an appropriate model of amino acid replacement is very important for the study of protein evolution and phylogenetic inference. We have built a tool for the selection of the best-fit model of evolution, among a set of candidate models, for a given protein sequence alignment. ProtTest is available under the GNU license from http://darwin.uvigo.es
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              The delayed rise of present-day mammals.

              Did the end-Cretaceous mass extinction event, by eliminating non-avian dinosaurs and most of the existing fauna, trigger the evolutionary radiation of present-day mammals? Here we construct, date and analyse a species-level phylogeny of nearly all extant Mammalia to bring a new perspective to this question. Our analyses of how extant lineages accumulated through time show that net per-lineage diversification rates barely changed across the Cretaceous/Tertiary boundary. Instead, these rates spiked significantly with the origins of the currently recognized placental superorders and orders approximately 93 million years ago, before falling and remaining low until accelerating again throughout the Eocene and Oligocene epochs. Our results show that the phylogenetic 'fuses' leading to the explosion of extant placental orders are not only very much longer than suspected previously, but also challenge the hypothesis that the end-Cretaceous mass extinction event had a major, direct influence on the diversification of today's mammals.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                30 August 2011
                : 6
                : 8
                : e24030
                Affiliations
                [1 ]Biosciences Research Division, Department of Primary Industries, Bundoora, Australia
                [2 ]Faculty of Veterinary Sciences, University of Sydney, Sydney, Australia
                [3 ]Australian Research Council Centre of Excellence in Kangaroo Genomics, Parkville, Australia
                [4 ]Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Australia
                [5 ]Department of Zoology, The University of Melbourne, Parkville, Australia
                [6 ]Department of Microbiology and Immunology, The University of Melbourne, Parkville, Australia
                [7 ]La Trobe University, Bundoora, Australia
                Ludwig-Maximilian-University, Germany
                Author notes

                Conceived and designed the experiments: KB BC. Performed the experiments: JW JL JCW ESWW JMS KRS. Analyzed the data: JW JL ESWW JMS KRS. Contributed reagents/materials/analysis tools: MBR. Wrote the paper: KB BC. Commented on drafts of the manuscript: JW JL JCW ESWW JMS KRS MBR KB BC.

                Article
                PONE-D-11-12508
                10.1371/journal.pone.0024030
                3166071
                21912615
                ae287fa6-75ab-4fc4-b692-26342519cf97
                Wang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 2 July 2011
                : 29 July 2011
                Page count
                Pages: 8
                Categories
                Research Article
                Biology
                Evolutionary Biology
                Comparative Genomics
                Evolutionary Immunology
                Genomics
                Comparative Genomics
                Genome Evolution
                Microbiology
                Microbial Control
                Zoology
                Mammalogy

                Uncategorized
                Uncategorized

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