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      Update of the Xylella spp. host plant database

      research-article
      European Food Safety Authority (EFSA)
      EFSA Journal
      John Wiley and Sons Inc.
      data extraction, host plants database, literature review, sequence type, ST, subspecies, Xylella fastidiosa, Xylella taiwanensis

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          Abstract

          Following a request from the European Commission, EFSA periodically updates the database on the host plants of Xylella spp. While previous editions of the database (2015 and 2016) dealt with the species Xylella fastidiosa only, this database version addresses the whole genus Xylella, including therefore both species X. fastidiosa and Xylella taiwanensis. The database now includes information on host plants of Xylella spp. retrieved from scientific literature up to November 2017 and from EUROPHYT notifications up to May 2018. An extensive literature search was performed to screen the scientific and technical literature published between the previous database update conducted in December 2015 and December 2017. The literature screening was supported by the Distiller SR software platform. The applied protocol for the extensive literature review and extensive information search, together with examples of data extraction, are described in detail in this report. This report also includes published information on resistance or tolerance of plant varieties to Xylella spp. The current database includes 563 plant species reported to be infected by X. fastidiosa, of which for 312 plant species the infection has been determined with at least two different detection methods. These species cover hundreds of host plant genera in 82 botanical families (61 botanical families when considering only records with at least two different detection methods). The update of this database of host plants of Xylella spp. reported world‐wide provides a key tool for risk management, risk assessment and research on this polyphagous bacterial plant pathogen.

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          Most cited references75

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          Scientific Opinion on the risks to plant health posed byXylella fastidiosain the EU territory, with the identification and evaluation of risk reduction options

          (2015)
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            Isolation and pathogenicity of Xylella fastidiosa associated to the olive quick decline syndrome in southern Italy

            In autumn 2013, the presence of Xylella fastidiosa, a xylem-limited Gram-negative bacterium, was detected in olive stands of an area of the Ionian coast of the Salento peninsula (Apulia, southern Italy), that were severely affected by a disease denoted olive quick decline syndrome (OQDS). Studies were carried out for determining the involvement of this bacterium in the genesis of OQDS and of the leaf scorching shown by a number of naturally infected plants other than olive. Isolation in axenic culture was attempted and assays were carried out for determining its pathogenicity to olive, oleander and myrtle-leaf milkwort. The bacterium was readily detected by quantitative polymerase chain reaction (qPCR) in all diseased olive trees sampled in different and geographically separated infection foci, and culturing of 51 isolates, each from a distinct OQDS focus, was accomplished. Needle-inoculation experiments under different environmental conditions proved that the Salentinian isolate De Donno belonging to the subspecies pauca is able to multiply and systemically invade artificially inoculated hosts, reproducing symptoms observed in the field. Bacterial colonization occurred in prick-inoculated olives of all tested cultivars. However, the severity of and timing of symptoms appearance differed with the cultivar, confirming their differential reaction.
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              Paradigms: examples from the bacterium Xylella fastidiosa.

              The history of advances in research on Xylella fastidiosa provides excellent examples of how paradigms both advance and limit our scientific understanding of plant pathogens and the plant diseases they cause. I describe this from a personal perspective, having been directly involved with many persons who made paradigm-changing discoveries, beginning with the discovery that a bacterium, not a virus, causes Pierce's disease of grape and other plant diseases in numerous plant species, including important crop and forest species.
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                Author and article information

                Journal
                EFSA J
                EFSA J
                10.1002/(ISSN)1831-4732
                EFS2
                EFSA Journal
                John Wiley and Sons Inc. (Hoboken )
                1831-4732
                10 September 2018
                September 2018
                : 16
                : 9 ( doiID: 10.1002/efs2.2018.16.issue-9 )
                : e05408
                Author notes
                [*] Correspondence: alpha@ 123456efsa.europa.eu
                Article
                EFS25408
                10.2903/j.efsa.2018.5408
                7009760
                32626043
                ae51e360-6fb7-486c-91b6-659703292860
                © 2018 European Food Safety Authority. EFSA Journal published by John Wiley and Sons Ltd on behalf of European Food Safety Authority.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited and no modifications or adaptations are made.

                History
                Page count
                Figures: 6, Tables: 14, Pages: 87, Words: 66719
                Categories
                Animal Health and Welfare
                Scientific Report
                Scientific Report
                Custom metadata
                2.0
                September 2018
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.7.5 mode:remove_FC converted:21.01.2020

                data extraction,host plants database,literature review,sequence type,st,subspecies,xylella fastidiosa,xylella taiwanensis

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