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      Soil carbon dioxide venting through rice roots

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          Abstract

          The growth of rice in submerged soils depends on its ability to form continuous gas channels—aerenchyma—through which oxygen (O 2) diffuses from the shoots to aerate the roots. Less well understood is the extent to which aerenchyma permits venting of respiratory carbon dioxide (CO 2) in the opposite direction. Large, potentially toxic concentrations of dissolved CO 2 develop in submerged rice soils. We show using X‐ray computed tomography and image‐based mathematical modelling that CO 2 venting through rice roots is far greater than thought hitherto. We found rates of venting equivalent to a third of the daily CO 2 fixation in photosynthesis. Without this venting through the roots, the concentrations of CO 2 and associated bicarbonate (HCO 3 ) in root cells would have been well above levels known to be toxic to roots. Removal of CO 2 and hence carbonic acid (H 2CO 3) from the soil was sufficient to increase the pH in the rhizosphere close to the roots by 0.7 units, which is sufficient to solubilize or immobilize various nutrients and toxicants. A sensitivity analysis of the model showed that such changes are expected for a wide range of plant and soil conditions.

          Abstract

          Large, potentially toxic concentrations of dissolved CO 2 accumulate in submerged paddy soils because CO 2 from plant and soil respiration escapes only very slowly. We found, using X‐ray computed tomography and image‐based mathematical modelling, venting of soil CO 2 through rice roots at rates equivalent to a third of the daily CO 2 fixation in photosynthesis. Without this venting, the concentrations of CO 2 and associated bicarbonate in root cells would have been well above levels known to be toxic to roots. Removal of soil CO 2 and hence carbonic acid will also affect the solubility and hence plant uptake of various nutrients and toxicants in the rhizosphere.

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          The Chemistry of Submerged Soils

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            Arabidopsis boron transporter for xylem loading.

            Boron deficiency hampers the productivity of 132 crops in more than 80 countries. Boron is essential in higher plants primarily for maintaining the integrity of cell walls and is also beneficial and might be essential in animals and in yeast. Understanding the molecular mechanism(s) of boron transport is crucial for alleviating boron deficiency. Here we describe the molecular identification of boron transporters in biological systems. The Arabidopsis thaliana mutant bor1-1 is sensitive to boron deficiency. Uptake studies indicated that xylem loading is the key step for boron accumulation in shoots with a low external boron supply and that the bor1-1 mutant is defective in this process. Positional cloning identified BOR1 as a membrane protein with homology to bicarbonate transporters in animals. Moreover, a fusion protein of BOR1 and green fluorescent protein (GFP) localized to the plasma membrane in transformed cells. The promoter of BOR1 drove GFP expression in root pericycle cells. When expressed in yeast, BOR1 decreased boron concentrations in cells. We show here that BOR1 is an efflux-type boron transporter for xylem loading and is essential for protecting shoots from boron deficiency.
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              Processes involved in formation and emission of methane in rice paddies

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                Author and article information

                Contributors
                g.kirk@cranfield.ac.uk
                Journal
                Plant Cell Environ
                Plant Cell Environ
                10.1111/(ISSN)1365-3040
                PCE
                Plant, Cell & Environment
                John Wiley and Sons Inc. (Hoboken )
                0140-7791
                1365-3040
                19 August 2019
                December 2019
                : 42
                : 12 ( doiID: 10.1111/pce.v42.12 )
                : 3197-3207
                Affiliations
                [ 1 ] School of Water, Energy and Environment Cranfield University Cranfield UK
                [ 2 ] Faculty of Engineering and Environment University of Southampton Southampton UK
                Author notes
                [*] [* ] Correspondence

                G. Kirk, School of Water, Energy and Environment, Cranfield University, Cranfield MK43 0AL, UK.

                Email: g.kirk@ 123456cranfield.ac.uk

                Author information
                https://orcid.org/0000-0002-7739-9772
                https://orcid.org/0000-0002-9387-326X
                Article
                PCE13638 PCE-19-0467.R2
                10.1111/pce.13638
                6972674
                31378945
                aed4ac54-615c-41a8-ac8f-e7b6a3f1b23d
                © 2019 The Authors. Plant, Cell & Environment published by John Wiley & Sons Ltd

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 29 May 2019
                : 29 July 2019
                : 31 July 2019
                Page count
                Figures: 4, Tables: 1, Pages: 11, Words: 5923
                Funding
                Funded by: Biotechnology and Biological Sciences Research Council , open-funder-registry 10.13039/501100000268;
                Award ID: BB/J011584/1
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                December 2019
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.7.5 mode:remove_FC converted:21.01.2020

                Plant science & Botany
                biological models,biological transport,x‐ray computed tomography
                Plant science & Botany
                biological models, biological transport, x‐ray computed tomography

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