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      Phylogenetic Relationships of Tribes Within Harpalinae (Coleoptera: Carabidae) as Inferred from 28S Ribosomal DNA and the Wingless Gene

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          Abstract

          Harpalinae is a large, monophyletic subfamily of carabid ground beetles containing more than 19,000 species in approximately 40 tribes. The higher level phylogenetic relationships within harpalines were investigated based on nucleotide data from two nuclear genes, wingless and 28S rDNA. Phylogenetic analyses of combined data indicate that many harpaline tribes are monophyletic, however the reconstructed trees showed little support for deeper nodes. In addition, our results suggest that the Lebiomorph Assemblage (tribes Lebiini, Cyclosomini, Graphipterini, Perigonini, Odacanthini, Lachnophorini, Pentagonicini, Catapiesini and Calophaenini), which is united by a morphological synapomorphy, is not monophyletic, and the tribe Lebiini is paraphyletic with respect to members of Cyclosomini. Two unexpected clades of tribes were supported: the Zuphiitae, comprised of Anthiini, Zuphiini, Helluonini, Dryptini, Galeritini, and Physocrotaphini; and a clade comprised of Orthogoniini, Pseudomorphini, and Graphipterini. The data presented in this study represent a dense sample of taxa to examine the molecular phylogeny of Harpalinae and provide a useful framework to examine the origin and evolution of morphological and ecological diversity in this group.

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          The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

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            The Limits of Amino Acid Sequence Data in Angiosperm Phylogenetic Reconstruction

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              Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

              We derive a Markov chain to sample from the posterior distribution for a phylogenetic tree given sequence information from the corresponding set of organisms, a stochastic model for these data, and a prior distribution on the space of trees. A transformation of the tree into a canonical cophenetic matrix form suggests a simple and effective proposal distribution for selecting candidate trees close to the current tree in the chain. We illustrate the algorithm with restriction site data on 9 plant species, then extend to DNA sequences from 32 species of fish. The algorithm mixes well in both examples from random starting trees, generating reproducible estimates and credible sets for the path of evolution.
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                Author and article information

                Journal
                J Insect Sci
                insc
                Journal of Insect Science
                University of Wisconsin Library
                1536-2442
                2008
                23 October 2008
                : 8
                : 63
                Affiliations
                [ 1 ]Interdisciplinary Program in Insect Science, University of Arizona, Tucson, Arizona 85721, U.S.A
                [ 2 ]Department of Biology, College of the Holy Cross, Worcester, Massachusetts 01610, U.S.A
                [ 3 ]Department of Entomology, University of Arizona, Tucson, Arizona 85721, U.S.A
                [ 4 ]Present address: Department of Biology, College of the Holy Cross, Worcester, Massachusetts 01610
                Author notes
                Article
                10.1673/031.008.6301
                3127421
                20302528
                b221e260-70d4-43bd-9f2d-06778d9be50b

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 14 September 2007
                : 19 December 2007
                Page count
                Pages: 32
                Categories
                Article

                Entomology
                nuclear genes,wingless,beetle systematics,ground beetles,lebiomorph,large subunit ribosomal dna

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