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      The Concave Face of Decorin Mediates Reversible Dimerization and Collagen Binding*

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          Abstract

          Background: In the crystal structure of decorin, the concave faces of two monomers interact to form a tight dimer.

          Results: The decorin dimer in solution is in equilibrium with stable monomers, and mutations on the concave face abolish collagen binding.

          Conclusion: Decorin binds collagen as a monomer.

          Significance: These findings help resolve the controversy about the functional oligomeric state of decorin.

          Abstract

          Decorin, the prototypical small leucine-rich proteoglycan, binds to collagen and thereby regulates collagen assembly into fibrils. The crystal structure of the decorin core protein revealed a tight dimer formed by the association of two monomers via their concave faces (Scott, P. G., McEwan, P. A., Dodd, C. M., Bergmann, E. M., Bishop, P. N., and Bella, J. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 15633–15638). Whether decorin binds collagen as a dimer has been controversial. Using analytical ultracentrifugation, we determined a dissociation constant of 1.37 ± 0.30 μ m for the mouse decorin dimer. Dimerization could be abolished by engineering glycosylation sites into the dimer interface; other interface mutants remained dimeric. The monomeric mutants were as stable as wild-type decorin in thermal unfolding experiments. Mutations on the concave face of decorin abolished collagen binding regardless of whether the mutant proteins retained the ability to dimerize or not. We conclude that the concave face of decorin mediates collagen binding and that the dimer therefore must dissociate to bind collagen.

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          Most cited references32

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          Calculation of hydrodynamic properties of globular proteins from their atomic-level structure.

          The solution properties, including hydrodynamic quantities and the radius of gyration, of globular proteins are calculated from their detailed, atomic-level structure, using bead-modeling methodologies described in our previous article (, Biophys. J. 76:3044-3057). We review how this goal has been pursued by other authors in the past. Our procedure starts from a list of atomic coordinates, from which we build a primary hydrodynamic model by replacing nonhydrogen atoms with spherical elements of some fixed radius. The resulting particle, consisting of overlapping spheres, is in turn represented by a shell model treated as described in our previous work. We have applied this procedure to a set of 13 proteins. For each protein, the atomic element radius is adjusted, to fit all of the hydrodynamic properties, taking values close to 3 A, with deviations that fall within the error of experimental data. Some differences are found in the atomic element radius found for each protein, which can be explained in terms of protein hydration. A computational shortcut makes the procedure feasible, even in personal computers. All of the model-building and calculations are carried out with a HYDROPRO public-domain computer program.
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            The regulatory roles of small leucine-rich proteoglycans in extracellular matrix assembly.

            Small leucine-rich proteoglycans (SLRPs) are involved in a variety of biological and pathological processes. This review focuses on their regulatory roles in matrix assembly. SLRPs have protein cores and hypervariable glycosylation with multivalent binding abilities. During development, differential interactions of SLRPs with other molecules result in tissue-specific spatial and temporal distributions. The changing expression patterns play a critical role in the regulation of tissue-specific matrix assembly and therefore tissue function. SLRPs play significant structural roles within extracellular matrices. In addition, they play regulatory roles in collagen fibril growth, fibril organization and extracellular matrix assembly. Moreover, they are involved in mediating cell-matrix interactions. Abnormal SLRP expression and/or structures result in dysfunctional extracellular matrices and pathophysiology. Altered expression of SLRPs has been found in many disease models, and structural deficiency also causes altered matrix assembly. SLRPs regulate assembly of the extracellular matrix, which defines the microenvironment, modulating both the extracellular matrix and cellular functions, with an impact on tissue function. © 2013 The Authors Journal compilation © 2013 FEBS.
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              The role of small leucine-rich proteoglycans in collagen fibrillogenesis.

              Small leucine-rich proteoglycans/proteins (SLRPs) are associated with collagen fibril formation, and therefore important for the proper formation of extracellular matrices. SLRPs are differentially expressed in tissues and during pathological conditions, contributing to the development of connective tissue properties. The binding of SLRPs to collagens have recently been characterized, and may give some clues to the significance of these interactions. In this mini review, we summarize published work in this field, and propose several mechanisms for how SLRPs can control collagen matrix structure and function. SLRPs appear to influence collagen cross-linking patterns. We also propose that the SLRP-collagen interactions can assist in the process of juxtaposing the collagen monomers by steric hindrance or by directly connecting two collagen monomers during the fibril growth. Copyright 2010 International Society of Matrix Biology. Published by Elsevier B.V. All rights reserved.
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                Author and article information

                Journal
                J Biol Chem
                J. Biol. Chem
                jbc
                jbc
                JBC
                The Journal of Biological Chemistry
                American Society for Biochemistry and Molecular Biology (9650 Rockville Pike, Bethesda, MD 20814, U.S.A. )
                0021-9258
                1083-351X
                6 December 2013
                29 October 2013
                29 October 2013
                : 288
                : 49
                : 35526-35533
                Affiliations
                From the []Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom,
                [§ ]Department of Structural and Molecular Biology, University College London, London WC1E 6BT, United Kingdom,
                []Research Department, Shriners Hospital for Children, Portland, Oregon 97239, and
                []Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, Oregon 97239
                Author notes
                [1 ] To whom correspondence should be addressed: Dept. of Life Sciences, Imperial College London, Sir Ernst Chain Bldg., London SW7 2AZ, UK. Tel.: 44-20-7594-7701; E-mail: e.hohenester@ 123456imperial.ac.uk .
                Article
                M113.504530
                10.1074/jbc.M113.504530
                3853298
                24169694
                b2f3d725-f37b-43c4-9f1e-0bd45e2dcec4
                © 2013 by The American Society for Biochemistry and Molecular Biology, Inc.

                Author's Choice—Final version full access.

                Creative Commons Attribution Unported License applies to Author Choice Articles

                History
                : 23 July 2013
                : 11 October 2013
                Categories
                Protein Structure and Folding

                Biochemistry
                extracellular matrix,site-directed mutagenesis,collagen,protein-protein interactions,proteoglycan

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