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      Global aspects of viral glycosylation

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          Abstract

          Enveloped viruses encompass some of the most common human pathogens causing infections of different severity, ranging from no or very few symptoms to lethal disease as seen with the viral hemorrhagic fevers. All enveloped viruses possess an envelope membrane derived from the host cell, modified with often heavily glycosylated virally encoded glycoproteins important for infectivity, viral particle formation and immune evasion. While N-linked glycosylation of viral envelope proteins is well characterized with respect to location, structure and site occupancy, information on mucin-type O-glycosylation of these proteins is less comprehensive. Studies on viral glycosylation are often limited to analysis of recombinant proteins that in most cases are produced in cell lines with a glycosylation capacity different from the capacity of the host cells. The glycosylation pattern of the produced recombinant glycoproteins might therefore be different from the pattern on native viral proteins. In this review, we provide a historical perspective on analysis of viral glycosylation, and summarize known roles of glycans in the biology of enveloped human viruses. In addition, we describe how to overcome the analytical limitations by using a global approach based on mass spectrometry to identify viral O-glycosylation in virus-infected cell lysates using the complex enveloped virus herpes simplex virus type 1 as a model. We underscore that glycans often pay important contributions to overall protein structure, function and immune recognition, and that glycans represent a crucial determinant for vaccine design. High throughput analysis of glycosylation on relevant glycoprotein formulations, as well as data compilation and sharing is therefore important to identify consensus glycosylation patterns for translational applications.

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          Most cited references308

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          Assembly of asparagine-linked oligosaccharides.

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            Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.

            Glycosylation of proteins is an essential process in all eukaryotes and a great diversity in types of protein glycosylation exists in animals, plants and microorganisms. Mucin-type O-glycosylation, consisting of glycans attached via O-linked N-acetylgalactosamine (GalNAc) to serine and threonine residues, is one of the most abundant forms of protein glycosylation in animals. Although most protein glycosylation is controlled by one or two genes encoding the enzymes responsible for the initiation of glycosylation, i.e. the step where the first glycan is attached to the relevant amino acid residue in the protein, mucin-type O-glycosylation is controlled by a large family of up to 20 homologous genes encoding UDP-GalNAc:polypeptide GalNAc-transferases (GalNAc-Ts) (EC 2.4.1.41). Therefore, mucin-type O-glycosylation has the greatest potential for differential regulation in cells and tissues. The GalNAc-T family is the largest glycosyltransferase enzyme family covering a single known glycosidic linkage and it is highly conserved throughout animal evolution, although absent in bacteria, yeast and plants. Emerging studies have shown that the large number of genes (GALNTs) in the GalNAc-T family do not provide full functional redundancy and single GalNAc-T genes have been shown to be important in both animals and human. Here, we present an overview of the GalNAc-T gene family in animals and propose a classification of the genes into subfamilies, which appear to be conserved in evolution structurally as well as functionally.
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              Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer.

              The envelope glycoprotein trimer (Env) on the surface of HIV-1 recognizes CD4(+) T cells and mediates viral entry. During this process, Env undergoes substantial conformational rearrangements, making it difficult to study in its native state. Soluble stabilized trimers have provided valuable insights into the Env structure, but they lack the hydrophobic membrane proximal external region (MPER, an important target of broadly neutralizing antibodies), the transmembrane domain, and the cytoplasmic tail. Here we present (i) a cryogenic electron microscopy (cryo-EM) structure of a clade B virus Env, which lacks only the cytoplasmic tail and is stabilized by the broadly neutralizing antibody PGT151, at a resolution of 4.2 angstroms and (ii) a reconstruction of this form of Env in complex with PGT151 and MPER-targeting antibody 10E8 at a resolution of 8.8 angstroms. These structures provide new insights into the wild-type Env structure.
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                Author and article information

                Journal
                Glycobiology
                Glycobiology
                glycob
                Glycobiology
                Oxford University Press
                0959-6658
                1460-2423
                July 2018
                21 March 2018
                21 March 2019
                : 28
                : 7
                : 443-467
                Affiliations
                Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen, Blegdamsvej 3B, Copenhagen N, Denmark
                Author notes
                To whom correspondence should be addressed: Tel: +45-35-33-5553; e-mail: hhw@ 123456sund.ku.dk (H.H.W.); Tel: +45-52-76-2315; e-mail: ieva@ 123456sund.ku.dk (I.B.)

                Co-corresponding authors.

                Article
                cwy021
                10.1093/glycob/cwy021
                7108637
                29579213
                b66186fe-aa33-4893-93c2-e2ee2874afc2
                © The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com

                This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( https://academic.oup.com/journals/pages/about_us/legal/notices)

                This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.

                History
                : 24 July 2017
                : 10 February 2018
                : 21 March 2018
                Page count
                Pages: 25
                Funding
                Funded by: anish Research Councils
                Award ID: 1331-00133B
                Funded by: next leader in precise genetic engineering
                Award ID: CDO2016
                Award ID: 2016CDO04210
                Funded by: University of Copenhagen
                Funded by: Danish National Research Foundation 10.13039/501100001732
                Award ID: DNRF107
                Funded by: Carl Emil Friis og hustru Olga Doris Friis Foundation
                Funded by: Lundbeck Foundation 10.13039/501100003554
                Award ID: R219-2016-545
                Categories
                Review
                Editor's Choice

                Biochemistry
                enveloped viruses,herpesvirus,mass spectrometry,mucin type o-glycosylation,viral glycans

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