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      SIRT6 safeguards human mesenchymal stem cells from oxidative stress by coactivating NRF2

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          Abstract

          SIRT6 belongs to the mammalian homologs of Sir2 histone NAD +-dependent deacylase family. In rodents, SIRT6 deficiency leads to aging-associated degeneration of mesodermal tissues. It remains unknown whether human SIRT6 has a direct role in maintaining the homeostasis of mesodermal tissues. To this end, we generated SIRT6 knockout human mesenchymal stem cells (hMSCs) by targeted gene editing. SIRT6-deficient hMSCs exhibited accelerated functional decay, a feature distinct from typical premature cellular senescence. Rather than compromised chromosomal stability, SIRT6-null hMSCs were predominately characterized by dysregulated redox metabolism and increased sensitivity to the oxidative stress. In addition, we found SIRT6 in a protein complex with both nuclear factor erythroid 2-related factor 2 (NRF2) and RNA polymerase II, which was required for the transactivation of NRF2-regulated antioxidant genes, including heme oxygenase 1 (HO-1). Overexpression of HO-1 in SIRT6-null hMSCs rescued premature cellular attrition. Our study uncovers a novel function of SIRT6 in maintaining hMSC homeostasis by serving as a NRF2 coactivator, which represents a new layer of regulation of oxidative stress-associated stem cell decay.

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          Most cited references32

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          Identification of novel transcripts in annotated genomes using RNA-Seq.

          We describe a new 'reference annotation based transcript assembly' problem for RNA-Seq data that involves assembling novel transcripts in the context of an existing annotation. This problem arises in the analysis of expression in model organisms, where it is desirable to leverage existing annotations for discovering novel transcripts. We present an algorithm for reference annotation-based transcript assembly and show how it can be used to rapidly investigate novel transcripts revealed by RNA-Seq in comparison with a reference annotation. The methods described in this article are implemented in the Cufflinks suite of software for RNA-Seq, freely available from http://bio.math.berkeley.edu/cufflinks. The software is released under the BOOST license. cole@broadinstitute.org; lpachter@math.berkeley.edu Supplementary data are available at Bioinformatics online.
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            SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span.

            Members of the sirtuin (SIRT) family of NAD-dependent deacetylases promote longevity in multiple organisms. Deficiency of mammalian SIRT6 leads to shortened life span and an aging-like phenotype in mice, but the underlying molecular mechanisms are unclear. Here we show that SIRT6 functions at chromatin to attenuate NF-kappaB signaling. SIRT6 interacts with the NF-kappaB RELA subunit and deacetylates histone H3 lysine 9 (H3K9) at NF-kappaB target gene promoters. In SIRT6-deficient cells, hyperacetylation of H3K9 at these target promoters is associated with increased RELA promoter occupancy and enhanced NF-kappaB-dependent modulation of gene expression, apoptosis, and cellular senescence. Computational genomics analyses revealed increased activity of NF-kappaB-driven gene expression programs in multiple Sirt6-deficient tissues in vivo. Moreover, haploinsufficiency of RelA rescues the early lethality and degenerative syndrome of Sirt6-deficient mice. We propose that SIRT6 attenuates NF-kappaB signaling via H3K9 deacetylation at chromatin, and hyperactive NF-kappaB signaling may contribute to premature and normal aging.
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              Stem cells and their niches.

              A constellation of intrinsic and extrinsic cellular mechanisms regulates the balance of self-renewal and differentiation in all stem cells. Stem cells, their progeny, and elements of their microenvironment make up an anatomical structure that coordinates normal homeostatic production of functional mature cells. Here we discuss the stem cell niche concept, highlight recent progress, and identify important unanswered questions. We focus on three mammalian stem cell systems where large numbers of mature cells must be continuously produced throughout adult life: intestinal epithelium, epidermal structures, and bone marrow.
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                Author and article information

                Journal
                Cell Res
                Cell Res
                Cell Research
                Nature Publishing Group
                1001-0602
                1748-7838
                February 2016
                15 January 2016
                1 February 2016
                : 26
                : 2
                : 190-205
                Affiliations
                [1 ]National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences , Beijing 100101, China
                [2 ]Biodynamic Optical Imaging Center, College of Life Sciences, Peking University , Beijing 100871, China
                [3 ]FSU-CAS Innovation Institute, Foshan University , Foshan, Guangdong 528000, China
                [4 ]State Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences , Beijing 100101, China
                [5 ]Gene Expression Laboratory, Salk Institute for Biological Studies , La Jolla, CA 92037, USA
                [6 ]Department of Pathology, Carver College of Medicine, University of Iowa , Iowa City, IA 52242, USA
                [7 ]Institute of Aging Research, Leibniz Link Partner Group on Stem Cell Aging, Hangzhou Normal University School of Medicine , Hangzhou, Zhejiang 310036, China
                [8 ]School of life sciences and technology, Tongji University , Shanghai 200092, China
                [9 ]The Key Laboratory of Geriatrics, Beijing Hospital & Beijing Institute of Geriatrics, Ministry of Health , Beijing 100730, China
                [10 ]Ministry of Education Key Laboratory of Cell Proliferation and Differentiation , Beijing 100871, China
                [11 ]Peking-Tsinghua Center for Life Sciences, Peking University , Beijing 100871, China
                [12 ]Center for Molecular and Translational Medicine, CMTM , Beijing 100101, China
                [13 ]Beijing Institute for Brain Disorders , Beijing 100069, China
                [14 ]University of Chinese Academy of Sciences , Beijing 100049, China
                Author notes
                [*]

                These three authors contributed equally to this work.

                Article
                cr20164
                10.1038/cr.2016.4
                4746611
                26768768
                b69a53c6-9c4f-4f45-929e-b85f58517bfa
                Copyright © 2016 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences

                This work is licensed under a Creative Commons Attribution 4.0 Unported License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 09 July 2015
                : 15 October 2015
                : 23 November 2015
                Categories
                Original Article

                Cell biology
                stem cell,aging,sirt6,nrf2,oxidative stress
                Cell biology
                stem cell, aging, sirt6, nrf2, oxidative stress

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