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      EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes.

      1 , ,

      Bioinformatics (Oxford, England)

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          Abstract

          EcoGene.org is a genome database and website dedicated to Escherichia coli K-12 substrain MG1655 that is revised daily using information derived from the biomedical literature and in-house analysis. EcoGene is a major source of annotation updates for the MG1655 Genbank record, one of only a few Genbank genome records that are updated by a community effort. The Reference Sequence (RefSeq) database, built by The National Center for Biotechnology Information, comprises a set of duplicate Genbank genome records that can be modified by the NCBI staff annotators. EcoGene-RefSeq is being developed as a stand-alone internet resource to facilitate the usage of EcoGene-based tools on any of the >2400 completed prokaryotic genome records that are currently available at the RefSeq database.

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          Author and article information

          Journal
          Bioinformatics
          Bioinformatics (Oxford, England)
          1367-4811
          1367-4803
          Aug 01 2013
          : 29
          : 15
          Affiliations
          [1 ] Department of Biochemistry and Molecular Biology, The Miller School of Medicine at the University of Miami, Miami, FL 33136, USA. j.zhou1@miami.edu
          Article
          btt302
          10.1093/bioinformatics/btt302
          3712216
          23736533

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