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      Xpo7 is a broad-spectrum exportin and a nuclear import receptor

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          Abstract

          Aksu et al. explore the vast cargo spectrum of exportin7/Xpo7 and present anti-Xpo7 nanobodies that acutely inhibit Xpo7’s transport cycles in living cells. Their expression selectively blocks nuclear enrichment of import cargoes as well as nuclear exclusion of export cargoes, establishing Xpo7 as a novel bidirectional nuclear transport receptor.

          Abstract

          Exportins bind cargo molecules in a RanGTP-dependent manner inside nuclei and transport them through nuclear pores to the cytoplasm. CRM1/Xpo1 is the best-characterized exportin because specific inhibitors such as leptomycin B allow straightforward cargo validations in vivo. The analysis of other exportins lagged far behind, foremost because no such inhibitors had been available for them. In this study, we explored the cargo spectrum of exportin 7/Xpo7 in depth and identified not only ∼200 potential export cargoes but also, surprisingly, ∼30 nuclear import substrates. Moreover, we developed anti-Xpo7 nanobodies that acutely block Xpo7 function when transfected into cultured cells. The inhibition is pathway specific, mislocalizes export cargoes of Xpo7 to the nucleus and import substrates to the cytoplasm, and allowed validation of numerous tested cargo candidates. This establishes Xpo7 as a broad-spectrum bidirectional transporter and paves the way for a much deeper analysis of exportin and importin function in the future.

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          Most cited references45

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          CORUM: the comprehensive resource of mammalian protein complexes—2009

          CORUM is a database that provides a manually curated repository of experimentally characterized protein complexes from mammalian organisms, mainly human (64%), mouse (16%) and rat (12%). Protein complexes are key molecular entities that integrate multiple gene products to perform cellular functions. The new CORUM 2.0 release encompasses 2837 protein complexes offering the largest and most comprehensive publicly available dataset of mammalian protein complexes. The CORUM dataset is built from 3198 different genes, representing ∼16% of the protein coding genes in humans. Each protein complex is described by a protein complex name, subunit composition, function as well as the literature reference that characterizes the respective protein complex. Recent developments include mapping of functional annotation to Gene Ontology terms as well as cross-references to Entrez Gene identifiers. In addition, a ‘Phylogenetic Conservation’ analysis tool was implemented that analyses the potential occurrence of orthologous protein complex subunits in mammals and other selected groups of organisms. This allows one to predict the occurrence of protein complexes in different phylogenetic groups. CORUM is freely accessible at (http://mips.helmholtz-muenchen.de/genre/proj/corum/index.html).
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            SMYD3 encodes a histone methyltransferase involved in the proliferation of cancer cells.

            Colorectal and hepatocellular carcinomas are some of the leading causes of cancer deaths worldwide, but the mechanisms that underly these malignancies are not fully understood. Here we report the identification of SMYD3, a gene that is over-expressed in the majority of colorectal carcinomas and hepatocellular carcinomas. Introduction of SMYD3 into NIH3T3 cells enhanced cell growth, whereas genetic knockdown with small-interfering RNAs (siRNAs) in cancer cells resulted in significant growth suppression. SMYD3 formed a complex with RNA polymerase II through an interaction with the RNA helicase HELZ and transactivated a set of genes that included oncogenes, homeobox genes and genes associated with cell-cycle regulation. SMYD3 bound to a motif, 5'-CCCTCC-3', present in the promoter region of downstream genes such as Nkx2.8. The SET domain of SMYD3 showed histone H3-lysine 4 (H3-K4)-specific methyltransferase activity, which was enhanced in the presence of the heat-shock protein HSP90A. Our findings suggest that SMYD3 has histone methyltransferase activity and plays an important role in transcriptional regulation as a member of an RNA polymerase complex. Furthermore, activation of SMYD3 may be a key factor in human carcinogenesis.
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              The permeability barrier of nuclear pore complexes appears to operate via hydrophobic exclusion.

              Nuclear pore complexes (NPCs) restrict the nucleocytoplasmic flux of most macromolecules, but permit facilitated passage of nuclear transport receptors and their cargo complexes. We found that a simple hydrophobic interaction column can mimic the selectivity of NPCs surprisingly well and that nuclear transport receptors appear to be the most hydrophobic soluble proteins. This suggests that surface hydrophobicity represents a major sorting criterion of NPCs. The rate of NPC passage of cargo-receptor complexes is, however, not dominated just by properties of the receptors. We found that large cargo domains drastically hinder NPC passage and require more than one receptor molecule for rapid translocation. This argues against a rigid translocation channel and instead suggests that NPC passage involves a partitioning of the entire translocating species into a hydrophobic phase, whereby the receptor:cargo ratio determines the solubility in that permeability barrier. Finally, we show that interfering with hydrophobic interactions causes a reversible collapse of the permeability barrier of NPCs, which is consistent with the assumption that the barrier is formed by phenylalanine-rich nucleoporin repeats that attract each other through hydrophobic interactions.
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                Author and article information

                Journal
                J Cell Biol
                J. Cell Biol
                jcb
                jcb
                The Journal of Cell Biology
                Rockefeller University Press
                0021-9525
                1540-8140
                02 July 2018
                02 July 2018
                : 217
                : 7
                : 2329-2340
                Affiliations
                [1 ]Department of Cellular Logistics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
                [2 ]Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
                [3 ]Institute for Clinical Chemistry, University Medical Center Göttingen, Göttingen, Germany
                [4 ]Institute for Molecular Biology, University Medical Center Göttingen, Göttingen, Germany
                Author notes
                Correspondence to Dirk Görlich: goerlich@ 123456mpibpc.mpg.de
                [*]

                M. Aksu and T. Pleiner contributed equally to this paper.

                M. Aksu’s present address is Dept. of Biochemistry, Oxford University, Oxford, England, UK.

                T. Pleiner’s present address is Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA.

                S. Karaca’s present address is Novartis Biologics Technical Development and Manufacturing, München, Germany.

                Author information
                http://orcid.org/0000-0001-8627-7526
                http://orcid.org/0000-0002-5104-0315
                http://orcid.org/0000-0003-2313-1225
                http://orcid.org/0000-0002-5162-0344
                http://orcid.org/0000-0001-7063-5456
                http://orcid.org/0000-0002-4343-5210
                Article
                201712013
                10.1083/jcb.201712013
                6028547
                29748336
                b7421248-ddd1-4035-a62b-145652b4e230
                © 2018 Aksu et al.

                This article is available under a Creative Commons License (Attribution 4.0 International, as described at https://creativecommons.org/licenses/by/4.0/).

                History
                : 04 December 2017
                : 09 April 2018
                : 24 April 2018
                Funding
                Funded by: Max-Planck-Gesellschaft, DOI https://doi.org/10.13039/501100004189;
                Funded by: Deutsche Forschungsgemeinschaft, DOI https://doi.org/10.13039/501100001659;
                Award ID: B3/SFB 860
                Award ID: Z02/SFB 1190
                Award ID: P14/SFB 1190
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                Cell biology
                Cell biology

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