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      Snf1 cooperates with the CWI MAPK pathway to mediate the degradation of Med13 following oxidative stress

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          Abstract

          Eukaryotic cells, when faced with unfavorable environmental conditions, mount either pro-survival or pro-death programs. The conserved cyclin C-Cdk8 kinase plays a key role in this decision. Both are members of the Cdk8 kinase module that, along with Med12 and Med13, associate with the core Mediator complex of RNA polymerase II. In Saccharomyces cerevisiae, oxidative stress triggers Med13 destruction, which releases cyclin C into the cytoplasm to promote mitochondrial fission and programmed cell death. The SCF Grr1 ubiquitin ligase mediates Med13 degradation dependent on the cell wall integrity pathway, MAPK Slt2. Here we show that the AMP kinase Snf1 activates a second SCF Grr1 responsive degron in Med13. Deletion of Snf1 resulted in nuclear retention of cyclin C and failure to induce mitochondrial fragmentation. This degron was able to confer oxidative-stress-induced destruction when fused to a heterologous protein in a Snf1 dependent manner. Although snf1∆ mutants failed to destroy Med13, deleting the degron did not prevent destruction. These results indicate that the control of Med13 degradation following H 2O 2 stress is complex, being controlled simultaneously by CWI and MAPK pathways.

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          Most cited references75

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          Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast.

          The two-hybrid system is a powerful technique for detecting protein-protein interactions that utilizes the well-developed molecular genetics of the yeast Saccharomyces cerevisiae. However, the full potential of this technique has not been realized due to limitations imposed by the components available for use in the system. These limitations include unwieldy plasmid vectors, incomplete or poorly designed two-hybrid libraries, and host strains that result in the selection of large numbers of false positives. We have used a novel multienzyme approach to generate a set of highly representative genomic libraries from S. cerevisiae. In addition, a unique host strain was created that contains three easily assayed reporter genes, each under the control of a different inducible promoter. This host strain is extremely sensitive to weak interactions and eliminates nearly all false positives using simple plate assays. Improved vectors were also constructed that simplify the construction of the gene fusions necessary for the two-hybrid system. Our analysis indicates that the libraries and host strain provide significant improvements in both the number of interacting clones identified and the efficiency of two-hybrid selections.
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            Dissecting the regulatory circuitry of a eukaryotic genome.

            Genome-wide expression analysis was used to identify genes whose expression depends on the functions of key components of the transcription initiation machinery in yeast. Components of the RNA polymerase II holoenzyme, the general transcription factor TFIID, and the SAGA chromatin modification complex were found to have roles in expression of distinct sets of genes. The results reveal an unanticipated level of regulation which is superimposed on that due to gene-specific transcription factors, a novel mechanism for coordinate regulation of specific sets of genes when cells encounter limiting nutrients, and evidence that the ultimate targets of signal transduction pathways can be identified within the initiation apparatus.
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              The Mediator complex: a central integrator of transcription.

              The RNA polymerase II (Pol II) enzyme transcribes all protein-coding and most non-coding RNA genes and is globally regulated by Mediator - a large, conformationally flexible protein complex with a variable subunit composition (for example, a four-subunit cyclin-dependent kinase 8 module can reversibly associate with it). These biochemical characteristics are fundamentally important for Mediator's ability to control various processes that are important for transcription, including the organization of chromatin architecture and the regulation of Pol II pre-initiation, initiation, re-initiation, pausing and elongation. Although Mediator exists in all eukaryotes, a variety of Mediator functions seem to be specific to metazoans, which is indicative of more diverse regulatory requirements.
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                Author and article information

                Journal
                Microb Cell
                Microb Cell
                Microb Cell
                Microb Cell
                Microbial Cell
                Shared Science Publishers OG
                2311-2638
                25 June 2018
                06 August 2018
                : 5
                : 8
                : 357-370
                Affiliations
                [1 ]Department of Molecular Biology, Graduate School of Biomedical Sciences, Rowan University, Stratford, NJ, 08084, USA.
                [2 ]Department of Microbiology and Molecular Biology, Brigham Young University, Provo, UT 84602, USA.
                [3 ]Current address: Department of Biological Sciences, Rowan University, 201 Mullica Hill Rd, Glassboro, NJ 08028. USA.
                [4 ]Current address: Shawnee High School, Medford, New Jersey 08055, USA.
                Author notes

                Conflict of interest: The authors declare no conflict of interest.

                Please cite this article as: Stephen D. Willis, David C. Stieg, Kai Li Ong, Ravina Shah, Alexandra K. Strich, Julianne H. Grose and Katrina F. Cooper ( 2018). Snf1 cooperates with the CWI MAPK pathway to mediate the degradation of Med13 following oxidative stress. Microbial Cell 5(8): 357-370. doi: 10.15698/mic2018.08.641

                Article
                MIC0178E118
                10.15698/mic2018.08.641
                6116281
                b7f09c05-4988-49d3-980c-80858600ec88
                Copyright @ 2018

                This is an open-access article released under the terms of the Creative Commons Attribution (CC BY) license, which allows the unrestricted use, distribution, and reproduction in any medium, provided the original author and source are acknowledged.

                History
                : 02 March 2018
                : 04 June 2018
                Funding
                We thank. S. Fields, S. Hohmann, E. Herrero, J. Nunnari, M. Schmidt and M. Solomon for strains and plasmids. We thank R. Strich for critical reading of this manuscript. This work was supported by grants from the National Institutes of Health awarded to K.F.C. (GM113196), and J.G (GM100376). The yeast two-hybrid strain was made by work supported by NIH grant P41 RR11823 awarded to T. N. Davis.
                Categories
                Microbiology
                Applied Microbiology
                Molecular Biology
                Genetics

                cyclin c,cdk8,med13,scfgrr1,ampk,snf1,ubiquitin mediated destruction,signal transduction,h2o2 stress,mapk

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