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HyPhy: hypothesis testing using phylogenies.

Bioinformatics

User-Computer Interface, Software, methods, Sequence Analysis, Protein, Sequence Alignment, Phylogeny, Models, Genetic, Evolution, Molecular, Computer Simulation, Algorithms

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      Abstract

      The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution. http://www.hyphy.org muse@stat.ncsu.edu HyPhydocumentation and tutorials are available at http://www.hyphy.org.

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      Journal
      10.1093/bioinformatics/bti079
      15509596

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