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      The Insight of In Silico and In Vitro evaluation of Beta vulgaris phytochemicals against Alzheimer’s disease targeting acetylcholinesterase

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          Abstract

          B. vulgaris extracts possess antioxidant, anti-inflammatory along with its role in improving memory disorders. Subsequently, in vitro and in silico studies of its purified phytochemicals may expand complementary and alternative Alzheimer’s therapeutic option. Super activation of acetylcholinesterase enzyme is associated explicitly with Alzheimer’s disease (AD) ultimately resulting in senile dementia. Hence, acetylcholinesterase enzyme inhibition is employed as a promising approach for AD treatment. Many FDA approved drugs are unable to cure the disease progression completely. The Present study was devised to explore the potential bioactive phytochemicals of B. vulgaris as alternative therapeutic agents against AD by conducting in vitro and in silico studies. To achieve this, chemical structures of phytochemicals were recruited from PubChem. Further, these compounds were analyzed for their binding affinities towards acetylcholinesterase (AChE) enzyme. Pharmacophoric ligand-based models showed major characteristics like, HBA, HBD, hydrophobicity, aromaticity and positively ionizable surface morphology for receptor binding. Virtual screening identified three hit compounds including betanin, myricetin and folic acid with least binding score compared to the reference drug, donepezil (-17 kcal/mol). Further, in vitro studies for anti-acetylcholinesterase activity of betanin and glycine betaine were performed. Dose response analysis showed 1.271 μM and 1.203 μM 50% inhibitory concentration (IC 50) values for betanin and glycine betaine compounds respectively. Our findings indicate that phytoconstituents of B. vulgaris can be implicated as an alternative therapeutic drug candidate for cognitive disorders like Alzheimer’s disease.

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          Most cited references34

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          SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules

          To be effective as a drug, a potent molecule must reach its target in the body in sufficient concentration, and stay there in a bioactive form long enough for the expected biologic events to occur. Drug development involves assessment of absorption, distribution, metabolism and excretion (ADME) increasingly earlier in the discovery process, at a stage when considered compounds are numerous but access to the physical samples is limited. In that context, computer models constitute valid alternatives to experiments. Here, we present the new SwissADME web tool that gives free access to a pool of fast yet robust predictive models for physicochemical properties, pharmacokinetics, drug-likeness and medicinal chemistry friendliness, among which in-house proficient methods such as the BOILED-Egg, iLOGP and Bioavailability Radar. Easy efficient input and interpretation are ensured thanks to a user-friendly interface through the login-free website http://www.swissadme.ch. Specialists, but also nonexpert in cheminformatics or computational chemistry can predict rapidly key parameters for a collection of molecules to support their drug discovery endeavours.
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            A new and rapid colorimetric determination of acetylcholinesterase activity

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              Lead- and drug-like compounds: the rule-of-five revolution.

              Citations in CAS SciFinder to the rule-of-five (RO5) publication will exceed 1000 by year-end 2004. Trends in the RO5 literature explosion that can be discerned are the further definitions of drug-like. This topic is explored in terms of drug-like physicochemical features, drug-like structural features, a comparison of drug-like and non-drug-like in drug discovery and a discussion of how drug-like features relate to clinical success. Physicochemical features of CNS drugs and features related to CNS blood-brain transporter affinity are briefly reviewed. Recent literature on features of non-oral drugs is reviewed and how features of lead-like compounds differ from those of drug-like compounds is discussed. Most recently, partly driven by NIH roadmap initiatives, considerations have arisen as to what tool-like means in the search for chemical tools to probe biology space. All these topics frame the scope of this short review/perspective.: © 2004 Elsevier Ltd . All rights reserved.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: SupervisionRole: ValidationRole: Writing – original draft
                Role: Data curationRole: Writing – review & editing
                Role: Formal analysisRole: Software
                Role: InvestigationRole: VisualizationRole: Writing – review & editing
                Role: Data curationRole: Resources
                Role: Data curationRole: Formal analysis
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                3 March 2022
                2022
                : 17
                : 3
                : e0264074
                Affiliations
                [1 ] Department of Biosciences, COMSATS University Islamabad (CUI), Islamabad, Pakistan
                [2 ] Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
                [3 ] Faculty of Medicine, Department of Pharmacology and Toxicology, Umm Al-Qura University, Makkah, Saudi Arabia
                [4 ] Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
                [5 ] Department of Life Sciences, University of Management and Technology, Lahore, Pakistan
                National Cancer Institute at Frederick, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0003-1218-4348
                https://orcid.org/0000-0002-2979-9501
                Article
                PONE-D-21-20610
                10.1371/journal.pone.0264074
                8893657
                35239683
                bb63a33d-d265-473d-ba0c-493bf281ae84
                © 2022 Rehman et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 25 June 2021
                : 2 February 2022
                Page count
                Figures: 11, Tables: 4, Pages: 19
                Funding
                The author(s) received no specific funding for this work.
                Categories
                Research Article
                Physical Sciences
                Chemistry
                Phytochemistry
                Phytochemicals
                Biology and Life Sciences
                Biochemistry
                Plant Biochemistry
                Phytochemicals
                Biology and Life Sciences
                Plant Science
                Plant Biochemistry
                Phytochemicals
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Amino Acids
                Aliphatic Amino Acids
                Glycine
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Amino Acids
                Aliphatic Amino Acids
                Glycine
                Biology and Life Sciences
                Biochemistry
                Proteins
                Amino Acids
                Aliphatic Amino Acids
                Glycine
                Biology and Life Sciences
                Biochemistry
                Biochemical Simulations
                Biology and Life Sciences
                Computational Biology
                Biochemical Simulations
                Medicine and Health Sciences
                Mental Health and Psychiatry
                Dementia
                Alzheimer's Disease
                Medicine and Health Sciences
                Neurology
                Dementia
                Alzheimer's Disease
                Medicine and Health Sciences
                Medical Conditions
                Neurodegenerative Diseases
                Alzheimer's Disease
                Medicine and Health Sciences
                Neurology
                Neurodegenerative Diseases
                Alzheimer's Disease
                Medicine and Health Sciences
                Pharmacology
                Drug Interactions
                Biology and Life Sciences
                Biochemistry
                Enzymology
                Enzymes
                Proteases
                Serine Proteases
                Biology and Life Sciences
                Biochemistry
                Proteins
                Enzymes
                Proteases
                Serine Proteases
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Vitamins
                B Vitamins
                Folic Acid
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Vitamins
                B Vitamins
                Folic Acid
                Biology and Life Sciences
                Biochemistry
                Neurochemistry
                Neurotransmitters
                Acetylcholine
                Biology and Life Sciences
                Neuroscience
                Neurochemistry
                Neurotransmitters
                Acetylcholine
                Custom metadata
                All relevant data are within the manuscript and its Supporting Information files.

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