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      Engineering naturally occurring CD7 T cells for the immunotherapy of hematological malignancies

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          Key Points

          • Naturally occurring CD7 negative T cells are functional effector T cells that can be used for chimeric antigen receptor therapy.

          • CD7 negative T cells expressing a CD7-CAR have robust antitumor activity and bypass fratricide.

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          Abstract

          Chimeric antigen receptor (CAR) T-cell therapy targeting T-cell acute lymphoblastic leukemia (T-ALL) faces limitations such as antigen selection and limited T-cell persistence. CD7 is an attractive antigen for targeting T-ALL, but overlapping expression on healthy T cells leads to fratricide of CD7-CAR T cells, requiring additional genetic modification. We took advantage of naturally occurring CD7 T cells to generate CD7-CAR (CD7-CAR CD7−) T cells. CD7-CAR CD7− T cells exhibited a predominantly CD4 + memory phenotype and had significant antitumor activity upon chronic antigen exposure in vitro and in xenograft mouse models. Based on these encouraging results, we next explored the utility of CD7 T cells for the immunotherapy of CD19 + hematological malignancies. Direct comparison of nonselected (bulk) CD19-CAR and CD19-CAR CD7− T cells revealed that CD19-CAR CD7− T cells had enhanced antitumor activity compared with their bulk counterparts in vitro and in vivo. Lastly, to gain insight into the behavior of CD19-CAR T cells with low levels of CD7 gene expression ( CD7 lo) in humans, we mined single-cell gene and T-cell receptor (TCR) expression data sets from our institutional CD19-CAR T-cell clinical study. CD19-CAR CD7lo T cells were present in the initial CD19-CAR T-cell product and could be detected postinfusion. Intriguingly, the only functional CD4 + CD19-CAR T-cell cluster observed postinfusion exhibited CD7 lo expression. Additionally, samples from patients responsive to therapy had a higher proportion of CD7 lo T cells than nonresponders (NCT03573700). Thus, CAR CD7− T cells have favorable biological characteristics and may present a promising T-cell subset for adoptive cell therapy of T-ALL and other hematological malignancies.

          Abstract

          CD7 is expressed on many T-cell malignancies and is an attractive target for CAR T-cell therapy for T-cell leukemia/lymphoma, but concurrent CD7 expression on CAR T cells predisposes to cell loss through fratricide. Freiwan and colleagues report on selection to enrich CD7-negative T cells as targets for CAR T-cell engineering and demonstrate that they have enhanced antitumor activity, suggesting a potentially attractive strategy for optimizing CAR T-cell therapy for T-cell malignancies.

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          Most cited references39

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          Integrated analysis of multimodal single-cell data

          Summary The simultaneous measurement of multiple modalities represents an exciting frontier for single-cell genomics and necessitates computational methods that can define cellular states based on multimodal data. Here, we introduce “weighted-nearest neighbor” analysis, an unsupervised framework to learn the relative utility of each data type in each cell, enabling an integrative analysis of multiple modalities. We apply our procedure to a CITE-seq dataset of 211,000 human peripheral blood mononuclear cells (PBMCs) with panels extending to 228 antibodies to construct a multimodal reference atlas of the circulating immune system. Multimodal analysis substantially improves our ability to resolve cell states, allowing us to identify and validate previously unreported lymphoid subpopulations. Moreover, we demonstrate how to leverage this reference to rapidly map new datasets and to interpret immune responses to vaccination and coronavirus disease 2019 (COVID-19). Our approach represents a broadly applicable strategy to analyze single-cell multimodal datasets and to look beyond the transcriptome toward a unified and multimodal definition of cellular identity.
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            Chimeric antigen receptor T cells for sustained remissions in leukemia.

            Relapsed acute lymphoblastic leukemia (ALL) is difficult to treat despite the availability of aggressive therapies. Chimeric antigen receptor-modified T cells targeting CD19 may overcome many limitations of conventional therapies and induce remission in patients with refractory disease. We infused autologous T cells transduced with a CD19-directed chimeric antigen receptor (CTL019) lentiviral vector in patients with relapsed or refractory ALL at doses of 0.76×10(6) to 20.6×10(6) CTL019 cells per kilogram of body weight. Patients were monitored for a response, toxic effects, and the expansion and persistence of circulating CTL019 T cells. A total of 30 children and adults received CTL019. Complete remission was achieved in 27 patients (90%), including 2 patients with blinatumomab-refractory disease and 15 who had undergone stem-cell transplantation. CTL019 cells proliferated in vivo and were detectable in the blood, bone marrow, and cerebrospinal fluid of patients who had a response. Sustained remission was achieved with a 6-month event-free survival rate of 67% (95% confidence interval [CI], 51 to 88) and an overall survival rate of 78% (95% CI, 65 to 95). At 6 months, the probability that a patient would have persistence of CTL019 was 68% (95% CI, 50 to 92) and the probability that a patient would have relapse-free B-cell aplasia was 73% (95% CI, 57 to 94). All the patients had the cytokine-release syndrome. Severe cytokine-release syndrome, which developed in 27% of the patients, was associated with a higher disease burden before infusion and was effectively treated with the anti-interleukin-6 receptor antibody tocilizumab. Chimeric antigen receptor-modified T-cell therapy against CD19 was effective in treating relapsed and refractory ALL. CTL019 was associated with a high remission rate, even among patients for whom stem-cell transplantation had failed, and durable remissions up to 24 months were observed. (Funded by Novartis and others; CART19 ClinicalTrials.gov numbers, NCT01626495 and NCT01029366.).
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              MiXCR: software for comprehensive adaptive immunity profiling.

                Author and article information

                Contributors
                Journal
                Blood
                Blood
                Blood
                The American Society of Hematology
                0006-4971
                1528-0020
                03 August 2022
                22 December 2022
                03 August 2022
                : 140
                : 25
                : 2684-2696
                Affiliations
                [1 ]Department of Bone Marrow Transplantation and Cellular Therapy, St. Jude Children’s Research Hospital, Memphis, TN
                [2 ]Department of Immunology, St. Jude Children’s Research Hospital, Memphis, TN
                [3 ]Department of Oncology, St. Jude Children’s Research Hospital, Memphis, TN
                [4 ]Department of Pathology, St. Jude Children’s Research Hospital, Memphis, TN
                [5 ]Center for Cell and Gene Therapy, Baylor College of Medicine, Texas Children’s Hospital, Houston Methodist Hospital, Houston, TX
                Author notes
                []Correspondence: M. Paulina Velasquez, Department of Bone Marrow Transplant and Cellular Therapy, St. Jude Children’s Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105; paulina.velasquez@ 123456stjude.org
                [∗]

                A.F. and J.T.Z. contributed equally to this study.

                Article
                S0006-4971(22)00971-5
                10.1182/blood.2021015020
                9935551
                35914226
                bcd529c6-809e-48c6-9f16-bb4ad24053af
                © 2022 by The American Society of Hematology. Licensed under Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0), permitting only noncommercial, nonderivative use with attribution. All other rights reserved.

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 8 December 2021
                : 21 July 2022
                Categories
                Regular Article
                Immunobiology and Immunotherapy

                Hematology
                Hematology

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