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      Entirely plasmid-based reverse genetics system for rotaviruses

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          Significance

          Rotaviruses (RVs) are a group of viruses that cause severe gastroenteritis in infants and young children. Until now, no strategy has been developed to generate infectious RVs entirely from cloned cDNAs. The absence of a reliable reverse genetics platform has been a major roadblock in the RV field, precluding numerous studies of RV replication and pathogenesis and hampering efforts to develop the next generation of RV vaccines. Here, we developed a plasmid-based reverse genetics system that is free from helper viruses and independent of any selection for RV. This technology will accelerate studies of RV pathobiology, allow rational design of RV vaccines, and yield RVs suitable for screening small molecules as potential antivirals.

          Abstract

          Rotaviruses (RVs) are highly important pathogens that cause severe diarrhea among infants and young children worldwide. The understanding of the molecular mechanisms underlying RV replication and pathogenesis has been hampered by the lack of an entirely plasmid-based reverse genetics system. In this study, we describe the recovery of recombinant RVs entirely from cloned cDNAs. The strategy requires coexpression of a small transmembrane protein that accelerates cell-to-cell fusion and vaccinia virus capping enzyme. We used this system to obtain insights into the process by which RV nonstructural protein NSP1 subverts host innate immune responses. By insertion into the NSP1 gene segment, we recovered recombinant viruses that encode split-green fluorescent protein–tagged NSP1 and NanoLuc luciferase. This technology will provide opportunities for studying RV biology and foster development of RV vaccines and therapeutics.

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          Most cited references37

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          Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.

          Existing protein tagging and detection methods are powerful but have drawbacks. Split protein tags can perturb protein solubility or may not work in living cells. Green fluorescent protein (GFP) fusions can misfold or exhibit altered processing. Fluorogenic biarsenical FLaSH or ReASH substrates overcome many of these limitations but require a polycysteine tag motif, a reducing environment and cell transfection or permeabilization. An ideal protein tag would be genetically encoded, would work both in vivo and in vitro, would provide a sensitive analytical signal and would not require external chemical reagents or substrates. One way to accomplish this might be with a split GFP, but the GFP fragments reported thus far are large and fold poorly, require chemical ligation or fused interacting partners to force their association, or require coexpression or co-refolding to produce detectable folded and fluorescent GFP. We have engineered soluble, self-associating fragments of GFP that can be used to tag and detect either soluble or insoluble proteins in living cells or cell lysates. The split GFP system is simple and does not change fusion protein solubility.
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            Efficient selection for high-expression transfectants with a novel eukaryotic vector

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              The Roles of Two IκB Kinase-related Kinases in Lipopolysaccharide and Double Stranded RNA Signaling and Viral Infection

              Viral infection and stimulation with lipopolysaccharide (LPS) or double stranded RNA (dsRNA) induce phosphorylation of interferon (IFN) regulatory factor (IRF)-3 and its translocation to the nucleus, thereby leading to the IFN-β gene induction. Recently, two IκB kinase (IKK)–related kinases, inducible IκB kinase (IKK-i) and TANK-binding kinase 1 (TBK1), were suggested to act as IRF-3 kinases and be involved in IFN-β production in Toll-like receptor (TLR) signaling and viral infection. In this work, we investigated the physiological roles of these kinases by gene targeting. TBK1-deficient embryonic fibroblasts (EFs) showed dramatic decrease in induction of IFN-β and IFN-inducible genes in response to LPS or dsRNA as well as after viral infection. However, dsRNA-induced expression of these genes was residually detected in TBK1-deficient cells and intact in IKK-i–deficient cells, but completely abolished in IKK-i/TBK1 doubly deficient cells. IRF-3 activation, in response not only to dsRNA but also to viral infection, was impaired in TBK1-deficient cells. Together, these results demonstrate that TBK1 as well as, albeit to a lesser extent, IKK-i play a crucial role in the induction of IFN-β and IFN-inducible genes in both TLR-stimulated and virus-infected EFs.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc. Natl. Acad. Sci. U.S.A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                28 February 2017
                30 January 2017
                : 114
                : 9
                : 2349-2354
                Affiliations
                [1] aLaboratory of Viral Replication, International Research Center for Infectious Diseases, Research Institute for Microbial Diseases, Osaka University , Suita, Osaka, 565-0871 Japan;
                [2] bDepartment of Virology and Parasitology, Fujita Health University School of Medicine , Toyoake, Aichi, 470-1192 Japan;
                [3] cDepartment of Molecular Virology, Research Institute for Microbial Diseases, Osaka University , Suita, Osaka, 565-0871 Japan
                Author notes
                1To whom correspondence should be addressed. Email: tkobayashi@ 123456biken.osaka-u.ac.jp .

                Edited by Peter Palese, Icahn School of Medicine at Mount Sinai, New York, NY, and approved December 28, 2016 (received for review November 7, 2016)

                Author contributions: Y.K., Y.M., K.T., and T. Kobayashi designed research; Y.K., S.K., T. Kawagishi, R.N., N.N., and M.O. performed research; Y.K. and T. Kobayashi analyzed data; and Y.K., Y.M., K.T., and T. Kobayashi wrote the paper.

                Article
                PMC5338561 PMC5338561 5338561 201618424
                10.1073/pnas.1618424114
                5338561
                28137864
                bdc832a9-8834-4e0a-9cf5-beec721d6e9e
                History
                Page count
                Pages: 6
                Funding
                Funded by: Japan Society for the Promotion of Science (JSPS) 501100001691
                Award ID: JP16K19138
                Funded by: Japan Society for the Promotion of Science (JSPS) 501100001691
                Award ID: JP15J04209
                Funded by: Japan Society for the Promotion of Science (JSPS) 501100001691
                Award ID: JP26292149
                Funded by: Japan Agency for Medical Research and Development
                Award ID: Research Program on Emerging and Re-emerging Infectious Diseases
                Categories
                Biological Sciences
                Microbiology
                From the Cover

                rotavirus,reverse genetics,vaccine,reporter virus
                rotavirus, reverse genetics, vaccine, reporter virus

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