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      De novo assembly and annotation of Hyalomma dromedarii tick (Acari: Ixodidae) sialotranscriptome with regard to gender differences in gene expression

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          Abstract

          Background

          Hard ticks are hematophagous ectoparasites characterized by their long-term feeding. The saliva that they secrete during their blood meal is their crucial weapon against host-defense systems including hemostasis, inflammation and immunity. The anti-hemostatic, anti-inflammatory and immune-modulatory activities carried out by tick saliva molecules warrant their pharmacological investigation. The Hyalomma dromedarii Koch, 1844 tick is a common parasite of camels and probably the best adapted to deserts of all hard ticks. Like other hard ticks, the salivary glands of this tick may provide a rich source of many compounds whose biological activities interact directly with host system pathways. Female H. dromedarii ticks feed longer than males, thereby taking in more blood. To investigate the differences in feeding behavior as reflected in salivary compounds, we performed de novo assembly and annotation of H. dromedarii sialotranscriptome paying particular attention to variations in gender gene expression.

          Results

          The quality-filtered Illumina sequencing reads deriving from a cDNA library of salivary glands led to the assembly of 15,342 transcripts. We deduced that the secreted proteins included: metalloproteases, glycine-rich proteins, mucins, anticoagulants of the mandanin family and lipocalins, among others. Expression analysis revealed differences in the expression of transcripts between male and female H. dromedarii that might explain the blood-feeding strategies employed by both genders.

          Conclusions

          The annotated sialome of H. dromedarii helps understand the interaction of tick-host molecules during blood-feeding and can lead to the discovery of new pharmacologically active proteins of ticks of the genus Hyalomma.

          Electronic supplementary material

          The online version of this article (10.1186/s13071-018-2874-9) contains supplementary material, which is available to authorized users.

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          Most cited references80

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            ProtTest: selection of best-fit models of protein evolution.

            Using an appropriate model of amino acid replacement is very important for the study of protein evolution and phylogenetic inference. We have built a tool for the selection of the best-fit model of evolution, among a set of candidate models, for a given protein sequence alignment. ProtTest is available under the GNU license from http://darwin.uvigo.es
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              Applications of next generation sequencing in molecular ecology of non-model organisms.

              As most biologists are probably aware, technological advances in molecular biology during the last few years have opened up possibilities to rapidly generate large-scale sequencing data from non-model organisms at a reasonable cost. In an era when virtually any study organism can 'go genomic', it is worthwhile to review how this may impact molecular ecology. The first studies to put the next generation sequencing (NGS) to the test in ecologically well-characterized species without previous genome information were published in 2007 and the beginning of 2008. Since then several studies have followed in their footsteps, and a large number are undoubtedly under way. This review focuses on how NGS has been, and can be, applied to ecological, population genetic and conservation genetic studies of non-model species, in which there is no (or very limited) genomic resources. Our aim is to draw attention to the various possibilities that are opening up using the new technologies, but we also highlight some of the pitfalls and drawbacks with these methods. We will try to provide a snapshot of the current state of the art for this rapidly advancing and expanding field of research and give some likely directions for future developments.
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                Author and article information

                Contributors
                bensaoud.chaima@gmail.com
                yutakajr@gmail.com
                cherifbenhamda@gmail.com
                flalix@gmail.com
                ursula.castrolive@gmail.com
                fernanda.faria@butantan.gov.br
                inacio.azevedo@butantan.gov.br
                ghedirakais@gmail.com
                ali.bouattour@pasteur.tn
                youmna.mgh@gmail.com
                ana.chudzinski@butantan.gov.br
                Journal
                Parasit Vectors
                Parasit Vectors
                Parasites & Vectors
                BioMed Central (London )
                1756-3305
                24 May 2018
                24 May 2018
                2018
                : 11
                : 314
                Affiliations
                [1 ]Université de Tunis El Manar, Institut Pasteur de Tunis, LR11IPT03, Service d’entomologie médicale, 1002 Tunis, Tunisie
                [2 ]ISNI 0000 0001 1702 8585, GRID grid.418514.d, Laboratório Especial de Toxinologia Aplicada, CeTICS, Instituto Butantan, ; Av. Vital Brazil, 1500, CEP, São Paulo, 05503-900 Brazil
                [3 ]Université de Tunis El Manar, Institut Pasteur de Tunis, LR11IPT09, Laboratoire de Bioinformatique, Biomathematique et biostatiqtiques, 1002 Tunis, Tunisie
                [4 ]ISNI 0000 0001 1702 8585, GRID grid.418514.d, Laboratório de Biologia Molecular, Instituto Butantan, ; Av. Vital Brazil, 1500, CEP, São Paulo, 05503-900 Brazil
                Article
                2874
                10.1186/s13071-018-2874-9
                5968504
                29793520
                bf82de69-e3c0-4ad9-abec-e40313d148c6
                © The Author(s). 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 9 January 2018
                : 26 April 2018
                Funding
                Funded by: Insitut pasteur de Tunis
                Award ID: PCI-05
                Categories
                Research
                Custom metadata
                © The Author(s) 2018

                Parasitology
                hyalomma dromedarii tick,camels,tunisia,sialotranscriptome,gene expression,gene enrichment

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