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      MUC4 gene polymorphisms associate with endometriosis development and endometriosis-related infertility

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          Abstract

          Background

          Mucin 4 ( MUC4) plays an important role in protecting and lubricating the epithelial surface of reproductive tracts, but its role in the pathogenesis of endometriosis is largely unknown.

          Methods

          To correlate MUC4 polymorphism with the risk of endometriosis and endometriosis-related infertility, we performed a case-control study of 140 patients and 150 healthy women. Six unique single-nucleotide polymorphisms (SNPs) (rs882605, rs1104760, rs2688513, rs2246901, rs2258447 and rs2291652) were selected for this study. DNA fragments containing the target SNP sites were amplified by polymerase chain reaction using the TaqMan SNP Genotyping Assay System to evaluate allele frequency and distribution of genotype in MUC4 polymorphisms.

          Results

          Both the T/G genotype of rs882605 and the frequency of haplotype T-T (rs882605 and rs1104760) were higher in patients than in controls and were statistically significant. The frequency of the C allele at rs1104760, the C allele at rs2688513, the G allele at rs2246901 and the A allele at rs2258447 were associated with advanced stage of endometriosis. Moreover, the G allele at rs882605 was verified as a key genetic factor for infertility in patients. Protein sequence analysis indicated that amino acid substitutions by genetic variations at rs882605, rs2688513 and rs2246901 occur in the putative functional loops and the type D von Willebrand factor (VWFD) domain in the MUC4 sequence.

          Conclusions

          MUC4 polymorphisms are associated with endometriosis development and endometriosis-related infertility in the Taiwanese population.

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          Most cited references43

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          Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide.

          Comparative surface feature analyses of the VP1 sequences of hepatitis A virus (HAV) and poliovirus type 1 allowed an alignment of the two sequences and an identification of probable HAV neutralization antigenic sites. A synthetic peptide containing the HAV-specific amino acid sequence of one of these sites induced anti-HAV-neutralizing antibodies. It is concluded that a structural homology exists between the two viruses, despite minimal primary sequence conservation.
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            PROSITE: a documented database using patterns and profiles as motif descriptors.

            Among the various databases dedicated to the identification of protein families and domains, PROSITE is the first one created and has continuously evolved since. PROSITE currently consists of a large collection of biologically meaningful motifs that are described as patterns or profiles, and linked to documentation briefly describing the protein family or domain they are designed to detect. The close relationship of PROSITE with the SWISS-PROT protein database allows the evaluation of the sensitivity and specificity of the PROSITE motifs and their periodic reviewing. In return, PROSITE is used to help annotate SWISS-PROT entries. The main characteristics and the techniques of family and domain identification used by PROSITE are reviewed in this paper.
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              Gametic disequilibrium measures: proceed with caution.

              Five different measures of gametic disequilibrium in current use and a new one based on R. C. Lewontin's D', are examined and compared. All of them, except the measure based on Lewontin's D', are highly dependent upon allelic frequencies, including four measures that are normalized in some manner. In addition, the measures suggested by A. H. D. Brown, M. F. Feldman and E. Nevo, and T. Ohta can have negative values when there is maximum disequilibrium and have rates of decay in infinite populations that are a function of the initial gametic array. The variances were large for all the measures in samples taken from populations at equilibrium under neutrality, with the measure based on D' having the lowest variance. In these samples, three of the measures were highly correlated, D2, D (equal to the correlation coefficient when there are two alleles at each locus) and the measure X(2) of Brown et al. Using frequency-dependent measures may result in mistaken conclusions, a fact illustrated by discussion of studies inferring recombinational hot spots and the effects of population bottlenecks from disequilibrium values.
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                Author and article information

                Journal
                BMC Med
                BMC Medicine
                BioMed Central
                1741-7015
                2011
                24 February 2011
                : 9
                : 19
                Affiliations
                [1 ]Department of Obstetrics and Gynecology, China Medical University, Taichung, Taiwan
                [2 ]Department of Public Health, China Medical University, Taichung, Taiwan
                [3 ]Department of Pathology, China Medical University, Taichung, Taiwan
                [4 ]Human Genetic Center, China Medical University Hospital, Taichung, Taiwan
                [5 ]Department of Obstetrics and Gynecology, Mackay Memorial Hospital, Taipei, Taiwan
                [6 ]School of Medicine, China Medical University, Taichung, Taiwan
                [7 ]Graduate Institute of Integrated Medicine, China Medical University, Taichung, Taiwan
                [8 ]Graduate Institute of Acupuncture Science, China Medical University, Taichung, Taiwan
                [9 ]School of Chinese Medicine, China Medical University, Taichung, Taiwan
                [10 ]Department of Health and Nutrition Biotechnology, Asia University, Taichung, Taiwan
                [11 ]School of Post-Baccalaureate Chinese Medicine, China Medical University, Taichung, Taiwan
                Article
                1741-7015-9-19
                10.1186/1741-7015-9-19
                3052195
                21349170
                c10642cd-1713-4a07-8df7-0659469851c5
                Copyright ©2011 Chang et al; licensee BioMed Central Ltd.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 8 September 2010
                : 24 February 2011
                Categories
                Research Article

                Medicine
                Medicine

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