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      Multimodal nanoparticles as alignment and correlation markers in fluorescence/soft X-ray cryo-microscopy/tomography of nucleoplasmic reticulum and apoptosis in mammalian cells

      research-article
      a , * , b , c , d , e , b , b , b , e , d , c , b , a
      Ultramicroscopy
      Elsevier
      cryoEM/T, electron cryo-microscopy/tomography, cryoFM, fluorescence cryo-microscopy, cryoXM/T, soft X-ray cryo-microscopy/tomography, eGFP, enhanced green fluorescent protein, N.A., numerical aperture, NEC, nuclear egress complex, NR, nucleoplasmic reticulum, PAH, poly(allylamine hydrochloride), PSS, poly(styrene sulfonate), Gold nanoparticles, Herpesvirus egress, Live-cell imaging, Nuclear membrane invaginations, Quantum dots, X-ray imaging

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          Abstract

          Correlative fluorescence and soft X-ray cryo-microscopy/tomography on flat sample holders is perfectly suited to study the uncompromised physiological status of adherent cells at its best possible preservation by imaging after fast cryo-immobilization. To understand the mechanism by which herpesviruses induce nucleoplasmic reticulum, i.e. invaginations of the nuclear envelope, during their egress from the host cell nucleus, morphologically similar structures found in laminopathies and after chemical induction were investigated as a potentially more easily accessible model system. For example, anti-retroviral protease inhibitors like Saquinavir also induce invaginations of the nuclear membranes. With the help of newly designed multimodal nanoparticles as alignment and correlation markers, and by optimizing fluorescence cryo-microscopy data acquisition, an elaborate three-dimensional network of nucleoplasmic reticulum was demonstrated in nuclei of Saquinavir-treated rabbit kidney cells expressing a fluorescently labeled inner nuclear membrane protein. In part of the protease inhibitor-treated samples, nuclei exhibited dramatic ultrastructural changes indicative of programmed cell death/apoptosis. This unexpected observation highlights another unique feature of soft X-ray microscopy, i.e. high absorption contrast information not relying on labeled cellular components, at a 3D resolution of approximately 40 nm (half-pitch) and through a sample thickness of several micrometers. These properties make it a valuable part of the cell biology imaging toolbox to visualize the cellular ultrastructure in its completeness.

          Highlights

          • Nucleoplasmic reticulum was demonstrated in nuclei of Saquinavir-treated cells.

          • New polyelectrolyte-Qdot ® 605 coated gold beads were employed as fiducials.

          • Saquinavir can induce a strong apoptotic phenotype in the nucleus.

          • CryoXT is an auspicious imaging technique in apoptosis research.

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          Most cited references76

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          Nuclear Membrane Dynamics and Reassembly in Living Cells: Targeting of an Inner Nuclear Membrane Protein in Interphase and Mitosis

          The mechanisms of localization and retention of membrane proteins in the inner nuclear membrane and the fate of this membrane system during mitosis were studied in living cells using the inner nuclear membrane protein, lamin B receptor, fused to green fluorescent protein (LBR–GFP). Photobleaching techniques revealed the majority of LBR–GFP to be completely immobilized in the nuclear envelope (NE) of interphase cells, suggesting a tight binding to heterochromatin and/or lamins. A subpopulation of LBR–GFP within ER membranes, by contrast, was entirely mobile and diffused rapidly and freely (D = 0.41 ± 0.1 μm2/s). High resolution confocal time-lapse imaging in mitotic cells revealed LBR–GFP redistributing into the interconnected ER membrane system in prometaphase, exhibiting the same high mobility and diffusion constant as observed in interphase ER membranes. LBR–GFP rapidly diffused across the cell within the membrane network defined by the ER, suggesting the integrity of the ER was maintained in mitosis, with little or no fragmentation and vesiculation. At the end of mitosis, nuclear membrane reformation coincided with immobilization of LBR–GFP in ER elements at contact sites with chromatin. LBR–GFP–containing ER membranes then wrapped around chromatin over the course of 2–3 min, quickly and efficiently compartmentalizing nuclear material. Expansion of the NE followed over the course of 30–80 min. Thus, selective changes in lateral mobility of LBR–GFP within the ER/NE membrane system form the basis for its localization to the inner nuclear membrane during interphase. Such changes, rather than vesiculation mechanisms, also underlie the redistribution of this molecule during NE disassembly and reformation in mitosis.
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            Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography.

            Cryoelectron tomography provides unprecedented insights into the macromolecular and supramolecular organization of cells in a close-to-living state. However because of the limited thickness range (< 0.5-1 μm) that is accessible with today's intermediate voltage electron microscopes only small prokaryotic cells or peripheral regions of eukaryotic cells can be examined directly. Key to overcoming this limitation is the ability to prepare sufficiently thin samples. Cryosectioning can be used to prepare thin enough sections but suffers from severe artefacts, such as substantial compression. Here we describe a procedure, based upon focused ion beam (FIB) milling for the preparation of thin (200-500 nm) lamellae from vitrified cells grown on electron microscopy (EM) grids. The self-supporting lamellae are apparently free of distortions or other artefacts and open up large windows into the cell's interior allowing tomographic studies to be performed on any chosen part of the cell. We illustrate the quality of sample preservation with a structure of the nuclear pore complex obtained from a single tomogram.
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              Is Open Access

              Cryo-electron tomography: The challenge of doing structural biology in situ

              Electron microscopy played a key role in establishing cell biology as a discipline, by producing fundamental insights into cellular organization and ultrastructure. Many seminal discoveries were made possible by the development of new sample preparation methods and imaging modalities. Recent technical advances include sample vitrification that faithfully preserves molecular structures, three-dimensional imaging by electron tomography, and improved image-processing methods. These new techniques have enabled the extraction of high fidelity structural information and are beginning to reveal the macromolecular organization of unperturbed cellular environments.
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                Author and article information

                Contributors
                Journal
                Ultramicroscopy
                Ultramicroscopy
                Ultramicroscopy
                Elsevier
                0304-3991
                1879-2723
                1 November 2014
                November 2014
                : 146
                : 46-54
                Affiliations
                [a ]Oxford Particle Imaging Centre, Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK
                [b ]Helmholtz Zentrum Berlin für Materialien und Energie GmbH, Wilhelm-Conrad-Röntgen Campus, 12489 Berlin, Germany
                [c ]Fachbereich Physik, Philipps Universität Marburg, Marburg 35043, Germany
                [d ]Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK
                [e ]Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, 17493 Greifswald-Insel Riems, Germany
                Author notes
                [* ]Correspondence to: Oxford Particle Imaging Centre, Division of Structural Biology, Wellcome Trust Centre for Human Genetics, Henry Wellcome Building for Genomic Medicine, Roosevelt Drive, Oxford, OX3 7BN, United Kingdom. Tel.: +44 1865 287815; fax: +44 1865 287553. christoph@ 123456strubi.ox.ac.uk
                Article
                S0304-3991(14)00109-0
                10.1016/j.ultramic.2014.05.009
                4181793
                24973653
                c139e7a9-71fc-4144-af07-6edbd7959b32
                © 2014 The Authors
                History
                : 24 March 2014
                : 15 May 2014
                : 24 May 2014
                Categories
                Article

                Microscopy & Imaging
                cryoem/t, electron cryo-microscopy/tomography,cryofm, fluorescence cryo-microscopy,cryoxm/t, soft x-ray cryo-microscopy/tomography,egfp, enhanced green fluorescent protein,n.a., numerical aperture,nec, nuclear egress complex,nr, nucleoplasmic reticulum,pah, poly(allylamine hydrochloride),pss, poly(styrene sulfonate),gold nanoparticles,herpesvirus egress,live-cell imaging,nuclear membrane invaginations,quantum dots,x-ray imaging

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