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      Circ-ZNF609 regulates G1-S progression in rhabdomyosarcoma

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          Abstract

          Circular RNAs (circRNAs) represent a class of covalently closed RNAs, derived from non-canonical splicing events, which are expressed in all eukaryotes and often conserved among different species. We previously showed that the circRNA originating from the ZNF609 locus (circ-ZNF609) acts as a crucial regulator of human primary myoblast growth: indeed, the down-regulation of the circRNA, and not of its linear counterpart, strongly reduced the proliferation rate of in vitro cultured myoblasts. To deepen our knowledge about circ-ZNF609 role in cell cycle regulation, we studied its expression and function in rhabdomyosarcoma (RMS), a pediatric skeletal muscle malignancy. We found that circ-ZNF609 is up-regulated in biopsies from the two major RMS subtypes, embryonal (ERMS) and alveolar (ARMS). Moreover, we discovered that in an ERMS-derived cell line circ-ZNF609 knock-down induced a specific block at the G1-S transition, a strong decrease of p-Akt protein level and an alteration of the pRb/Rb ratio. Regarding p-Akt, we were able to show that circ-ZNF609 acts by counteracting p-Akt proteasome-dependent degradation, thus working as a new regulator of cell proliferation-related pathways. As opposed to ERMS-derived cells, the circRNA depletion had no cell cycle effects in ARMS-derived cells. Since in these cells the p53 gene resulted down-regulated, with a concomitant up-regulation of its cell cycle-related target genes, we suggest that this could account for the lack of circ-ZNF609 effect in ARMS.

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          Most cited references32

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          The Reactome Pathway Knowledgebase

          Abstract The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism, and other cellular processes as an ordered network of molecular transformations—an extended version of a classic metabolic map, in a single consistent data model. Reactome functions both as an archive of biological processes and as a tool for discovering unexpected functional relationships in data such as gene expression profiles or somatic mutation catalogues from tumor cells. To support the continued brisk growth in the size and complexity of Reactome, we have implemented a graph database, improved performance of data analysis tools, and designed new data structures and strategies to boost diagram viewer performance. To make our website more accessible to human users, we have improved pathway display and navigation by implementing interactive Enhanced High Level Diagrams (EHLDs) with an associated icon library, and subpathway highlighting and zooming, in a simplified and reorganized web site with adaptive design. To encourage re-use of our content, we have enabled export of pathway diagrams as ‘PowerPoint’ files.
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            Oncogenic Role of Fusion-circRNAs Derived from Cancer-Associated Chromosomal Translocations.

            Chromosomal translocations encode oncogenic fusion proteins that have been proven to be causally involved in tumorigenesis. Our understanding of whether such genomic alterations also affect non-coding RNAs is limited, and their impact on circular RNAs (circRNAs) has not been explored. Here, we show that well-established cancer-associated chromosomal translocations give rise to fusion circRNAs (f-circRNA) that are produced from transcribed exons of distinct genes affected by the translocations. F-circRNAs contribute to cellular transformation, promote cell viability and resistance upon therapy, and have tumor-promoting properties in in vivo models. Our work expands the current knowledge regarding molecular mechanisms involved in cancer onset and progression, with potential diagnostic and therapeutic implications.
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              E2F target genes: unraveling the biology.

              The E2F transcription factors are downstream effectors of the retinoblastoma protein (pRB) pathway and are required for the timely regulation of numerous genes essential for DNA replication and cell cycle progression. Several laboratories have used genome-wide approaches to discover novel target genes of E2F, leading to the identification of several hundred such genes that are involved not only in DNA replication and cell cycle progression, but also in DNA damage repair, apoptosis, differentiation and development. These new findings greatly enrich our understanding of how E2F controls transcription and cellular homeostasis.
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                Author and article information

                Journal
                8711562
                Oncogene
                Oncogene
                Oncogene
                0950-9232
                1476-5594
                5 February 2019
                22 January 2019
                May 2019
                24 July 2019
                : 38
                : 20
                : 3843-3854
                Affiliations
                [1 ]Department of Biology and Biotechnology Charles Darwin and IBPM, Sapienza University of Rome, Rome, Italy
                [2 ]Department of Pediatrics, Sapienza University of Rome, Rome, Italy
                [3 ]Center for Life Nano Science@Sapienza, Istituto Italiano di Tecnologia, Rome, Italy
                Author notes
                Correspondence to: Irene Bozzoni; irene.bozzoni@ 123456uniroma1.it ; tel: 0039 06 4991 2202; address: Sapienza University of Rome, Department of Biology and Biotechnology, CU026, Piazzale Aldo Moro 5 – 00185, Rome (RM), Italy
                Article
                EMS81170
                10.1038/s41388-019-0699-4
                6544520
                30670781
                c245d16b-13d5-4b96-be20-4d628ded4150

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                Categories
                Article

                Oncology & Radiotherapy
                circular rna,rhabdomyosarcoma,cell proliferation,g1-s transition
                Oncology & Radiotherapy
                circular rna, rhabdomyosarcoma, cell proliferation, g1-s transition

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