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      Consequences of CYP2D6 Copy-Number Variation for Pharmacogenomics in Psychiatry

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          Abstract

          Pharmacogenomics represents a potentially powerful enhancement to the current standard of care for psychiatric patients. However, a variety of biological and technical challenges must be addressed in order to provide adequate clinical decision support for personalized prescribing and dosing based on genomic data. This is particularly true in the case of CYP2D6, a key drug-metabolizing gene, which not only harbors multiple genetic variants known to affect enzyme function but also shows a broad range of copy-number and hybrid alleles in various patient populations. Here, we describe several challenges in the accurate measurement and interpretation of data from the CYP2D6 locus including the clinical consequences of increased copy number. We discuss best practices for overcoming these challenges and then explore various current and future applications of pharmacogenomic analysis of CYP2D6 in psychiatry.

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          Most cited references58

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          CPIC: Clinical Pharmacogenetics Implementation Consortium of the Pharmacogenomics Research Network.

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            Pharmacogenomics in the clinic.

            After decades of discovery, inherited variations have been identified in approximately 20 genes that affect about 80 medications and are actionable in the clinic. And some somatically acquired genetic variants direct the choice of 'targeted' anticancer drugs for individual patients. Current efforts that focus on the processes required to appropriately act on pharmacogenomic variability in the clinic are moving away from discovery and towards implementation of an evidenced-based strategy for improving the use of medications, thereby providing a cornerstone for precision medicine.
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              The Pharmacogene Variation (PharmVar) Consortium: Incorporation of the Human Cytochrome P450 ( CYP ) Allele Nomenclature Database

              The Human Cytochrome P450 (CYP) Allele Nomenclature Database, a critical resource for the pharmacogenetics and genomics communities, has transitioned to the Pharmacogene Variation (PharmVar) Consortium. In this report we provide a summary of the current database, provide an overview of the PharmVar consortium, and highlight the PharmVar database which will serve as the new home for pharmacogene nomenclature.
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                Author and article information

                Contributors
                Journal
                Front Psychiatry
                Front Psychiatry
                Front. Psychiatry
                Frontiers in Psychiatry
                Frontiers Media S.A.
                1664-0640
                20 June 2019
                2019
                : 10
                : 432
                Affiliations
                [1]Coriell Life Sciences , Philadelphia, PA, United States
                Author notes

                Edited by: Chad A. Bousman, University of Calgary, Canada

                Reviewed by: Andrea Gaedigk, Children’s Mercy Hospital, United States; Todd Skaar, Indiana University Hospital, United States

                *Correspondence: Jeffrey A. Shaman, jshaman@ 123456coriell.com

                This article was submitted to Molecular Psychiatry, a section of the journal Frontiers in Psychiatry

                †These authors have contributed equally to this work.

                Article
                10.3389/fpsyt.2019.00432
                6595891
                31281270
                c2a28a4b-cace-40c5-8b28-56b35e80452a
                Copyright © 2019 Jarvis, Peter and Shaman

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 22 March 2019
                : 03 June 2019
                Page count
                Figures: 4, Tables: 2, Equations: 0, References: 65, Pages: 14, Words: 7658
                Categories
                Psychiatry
                Review

                Clinical Psychology & Psychiatry
                personalized medicine,precision medicine,gene deletion,gene duplications,pharmacogenomics,cytochrome p450 cyp2d6,psychiatry,copy-number variation

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