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      Unilateral ureteral obstruction causes gut microbial dysbiosis and metabolome disorders contributing to tubulointerstitial fibrosis

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          Abstract

          Chronic kidney disease (CKD) increases the risk and prevalence of cardiovascular disease (CVD) morbidity and mortality. Recent studies have revealed marked changes in the composition of the microbiome and the metabolome and their potential influence in renal disease and CVD via the accumulation of microbial-derived uremic toxins. However, the effect of unilateral ureteral obstruction (UUO) on the gut microbiome and circulating metabolites is unknown. Male Sprague-Dawley rats were randomized to UUO and sham-operated control groups. Renal histology, colonic microbiota, and plasma metabolites were examined two weeks later. We employed 16S rRNA sequence and untargeted metabolomic analyses to explore the changes in colonic microbiota and plasma metabolites and their relationship with tubulointerstitial fibrosis (TIF). The UUO rats exhibited tubular atrophy and dilatation, interstitial fibrosis and inflammatory cell infiltration in the obstructed kidney. UUO rats showed significant colonic enrichment and depletion of genera. Significant differences were identified in 219 plasma metabolites involved in lipid, amino acid, and bile acid metabolism, which were consistent with gut microbiota-related metabolism. Interestingly, tryptophan and its metabolites kynurenine, 5-hydroxytryptophan and 5-hydroxytryptamine levels, which were linked with TIF, correlated with nine specific genera. Plasma tryptophan level was positively correlated with Clostridium IV, Turicibacter, Pseudomonas and Lactobacillales, and negatively correlated with Oscillibacter, Blautia, and Intestinimonas, which possess the genes encoding tryptophan synthase (K16187), indoleamine 2,3-dioxygenase (K00463) and tryptophan 2,3-dioxygenase (K00453) and their corresponding enzymes (EC:1.13.11.52 and EC:1.13.11.11) that exacerbate TIF. In conclusion, UUO results in profound changes in the gut microbiome and circulating metabolites, events that contribute to the pathogenesis of inflammation and TIF.

          Chronic kidney disease: The contribution of gut bacteria

          An imbalance in gut bacteria contributes to kidney tissue scarring and declined kidney function. An international study led by Ying-Yong Zhao at Northwest University, Xi’an, China, analyzed the composition of the gut microbes in a rat model of chronic renal injury. They found that urinary tract obstruction was associated with changes in gut microbe composition and altered gut microbe-related metabolism of lipids, amino acids and bile acid. Lower levels of the essential amino acid tryptophan in plasma were linked to the deterioration of renal function. Treatment with ergone, a compound extracted from medicinal mushrooms, restored the levels of plasma tryptophan as well as the expression of proteins involved in maintaining the intestinal barrier. These findings suggest that restoring the function of the intestinal barrier could prevent kidney damage due to microbial imbalance in the gut.

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          Expansion of Urease- and Uricase-Containing, Indole- and p-Cresol-Forming and Contraction of Short-Chain Fatty Acid-Producing Intestinal Microbiota in ESRD

          Background: Intestinal microbiome constitutes a symbiotic ecosystem that is essential for health, and changes in its composition/function cause various illnesses. Biochemical milieu shapes the structure and function of the microbiome. Recently, we found marked differences in the abundance of numerous bacterial taxa between ESRD and healthy individuals. Influx of urea and uric acid and dietary restriction of fruits and vegetables to prevent hyperkalemia alter ESRD patients' intestinal milieu. We hypothesized that relative abundances of bacteria possessing urease, uricase, and p-cresol- and indole-producing enzymes is increased, while abundance of bacteria containing enzymes converting dietary fiber to short-chain fatty acids (SCFA) is reduced in ESRD. Methods: Reference sets of bacteria containing genes of interest were compiled to family, and sets of intestinal bacterial families showing differential abundances between 12 healthy and 24 ESRD individuals enrolled in our original study were compiled. Overlap between sets was assessed using hypergeometric distribution tests. Results: Among 19 microbial families that were dominant in ESRD patients, 12 possessed urease, 5 possessed uricase, and 4 possessed indole and p-cresol-forming enzymes. Among 4 microbial families that were diminished in ESRD patients, 2 possessed butyrate-forming enzymes. Probabilities of these overlapping distributions were <0.05. Conclusions: ESRD patients exhibited significant expansion of bacterial families possessing urease, uricase, and indole and p-cresol forming enzymes, and contraction of families possessing butyrate-forming enzymes. Given the deleterious effects of indoxyl sulfate, p-cresol sulfate, and urea-derived ammonia, and beneficial actions of SCFA, these changes in intestinal microbial metabolism contribute to uremic toxicity and inflammation.
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            The intestinal microbiota, a leaky gut, and abnormal immunity in kidney disease.

            Chronic kidney disease (CKD) and end-stage renal disease (ESRD) are associated with systemic inflammation and acquired immunodeficiency, which promote cardiovascular disease, body wasting, and infections as leading causes of death. This phenomenon persists despite dialysis-related triggers of immune deregulation having been largely eliminated. Here we propose a potential immunoregulatory role of the intestinal microbiota in CKD/ESRD. We discuss how the metabolic alterations of uremia favor pathogen overgrowth (dysbiosis) in the gut and an increased translocation of living bacteria and bacterial components. This process has the potential to activate innate immunity and systemic inflammation. Persistent innate immune activation involves the induction of immunoregulatory mediators that suppress innate and adaptive immunity, similar to the concept of 'endotoxin tolerance' or 'immune paralysis' in advanced sepsis or chronic infections. Renal science has largely neglected the gut as a source of triggers for CKD/ESRD-related immune derangements and complications and lags behind on the evolving microbiota research. Interdisciplinary research activities at all levels are needed to unravel the pathogenic role of the intestinal microbiota in kidney disease and to evaluate if therapeutic interventions that manipulate the microbiota, such as pre- or probiotics, have a therapeutic potential to correct CKD/ESRD-related immune deregulation and to prevent the associated complications.
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              The global burden of chronic kidney disease: estimates, variability and pitfalls

              Chronic kidney disease (CKD) is currently defined by abnormalities of kidney structure or function assessed using a matrix of variables — including glomerular filtration rate (GFR), thresholds of albuminuria and duration of injury — and is considered by many to be a common disorder globally.
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                Author and article information

                Contributors
                +86 29 88305273 , zyy@nwu.edu.cn , zhaoyybr@163.com
                Journal
                Exp Mol Med
                Exp. Mol. Med
                Experimental & Molecular Medicine
                Nature Publishing Group UK (London )
                1226-3613
                2092-6413
                27 March 2019
                27 March 2019
                March 2019
                : 51
                : 3
                : 38
                Affiliations
                [1 ]ISNI 0000 0004 1761 5538, GRID grid.412262.1, School of Pharmacy, Faculty of Life Science and Medicine, , Northwest University, ; No. 229 Taibai North Road, 710069 Xi’an, Shaanxi China
                [2 ]ISNI 0000 0001 0668 7243, GRID grid.266093.8, Division of Nephrology and Hypertension, School of Medicine, , University of California Irvine, ; Irvine, CA 92897 USA
                [3 ]ISNI 0000 0001 2188 8502, GRID grid.266832.b, Department of Internal Medicine, , University of New Mexico, Comprehensive Cancer Center, ; Albuquerque, NM 87131 USA
                [4 ]ISNI 0000000123704535, GRID grid.24516.34, Department of Nephrology, Shanghai East Hospital, , Tongji University School of Medicine, ; No. 150 Jimo Road, 200120 Shanghai, China
                Author information
                http://orcid.org/0000-0002-2259-7739
                http://orcid.org/0000-0002-0239-7342
                Article
                234
                10.1038/s12276-019-0234-2
                6437207
                30918245
                c4116419-3427-40ae-8233-3b0c40beb008
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 30 October 2018
                : 11 December 2018
                : 20 December 2018
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001809, National Natural Science Foundation of China (National Science Foundation of China);
                Award ID: 81673578
                Award ID: 81872985
                Award Recipient :
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                © The Author(s) 2019

                Molecular medicine
                Molecular medicine

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