7
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Comparing microCT Staining and Scanning Methodology for Brain Studies in Various Sizes of Spiders

      research-article

      Read this article at

      ScienceOpenPublisherPMC
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          ABSTRACT

          Recent advances in microCT are facilitating the investigation of microstructures in spiders and insects leading to an increased number of studies investigating their neuroanatomy. Although microCT is a powerful tool, its effectiveness depends on appropriate tissue preparation and scan settings, particularly for soft, non‐sclerotized tissues, such as muscles, organs, and neural tissues. As the application of microCT in spiders is only in its infancy, published protocols are often difficult to implement due to substantial size variation of the specimens. The present study was initiated to determine how to account for this variation. Our work builds on previous methods using microCT to image spider brains, with the aim to consolidate current knowledge and reduce time spent troubleshooting appropriate methodology, thereby facilitating future studies of spiders and their central nervous systems (CNS). We tested three different preparation and imaging techniques based on published protocols with minor modifications using 216 spiders with prosoma lengths ranging from 1.25 mm (small spiders) to 13.33 mm (large spiders). We compared the efficacy of the various specimen preparations, staining methods, and scan settings by categorizing the quality of dorsal and lateral microCT scans. We observed that only the phosphotungstic acid (PTA) staining agent resulted in complete staining of the prosoma and the CNS, allowing the CNS structures to be distinguished for small, medium, and large spiders. The use of image averaging, increased number of projections, image exposure timing, and detector binning did not greatly affect image quality for small and larger spiders but reduced noise. These settings did help improve image quality for medium spiders in conjunction with higher resolutions and an aluminum filter. We discussed the suitability of methods concerning spider size, effort, chemical risk, and image quality.

          Abstract

          This study refines microCT techniques for imaging spider neuroanatomy, focusing on size variation. The phosphatetungstic acid (PTA) staining agent was most effective for staining spider CNS structures. The research provides optimized protocols, reducing troubleshooting time, and improving image quality, thereby advancing the study of spider central nervous systems.

          Related collections

          Most cited references56

          • Record: found
          • Abstract: found
          • Article: not found

          NIH Image to ImageJ: 25 years of image analysis

          For the past twenty five years the NIH family of imaging software, NIH Image and ImageJ have been pioneers as open tools for scientific image analysis. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.
            • Record: found
            • Abstract: found
            • Article: not found

            User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.

            Active contour segmentation and its robust implementation using level set methods are well-established theoretical approaches that have been studied thoroughly in the image analysis literature. Despite the existence of these powerful segmentation methods, the needs of clinical research continue to be fulfilled, to a large extent, using slice-by-slice manual tracing. To bridge the gap between methodological advances and clinical routine, we developed an open source application called ITK-SNAP, which is intended to make level set segmentation easily accessible to a wide range of users, including those with little or no mathematical expertise. This paper describes the methods and software engineering philosophy behind this new tool and provides the results of validation experiments performed in the context of an ongoing child autism neuroimaging study. The validation establishes SNAP intrarater and interrater reliability and overlap error statistics for the caudate nucleus and finds that SNAP is a highly reliable and efficient alternative to manual tracing. Analogous results for lateral ventricle segmentation are provided.
              • Record: found
              • Abstract: found
              • Article: not found

              MicroCT for developmental biology: a versatile tool for high-contrast 3D imaging at histological resolutions.

              Understanding developmental processes requires accurate visualization and parameterization of three-dimensional embryos. Tomographic imaging methods offer automatically aligned and calibrated volumetric images, but the usefulness of X-ray CT imaging for developmental biology has been limited by the low inherent contrast of embryonic tissues. Here, I demonstrate simple staining methods that allow high-contrast imaging of embryonic tissues at histological resolutions using a commercial microCT system. Quantitative comparisons of images of chick embryos treated with different contrast agents show that three very simple methods using inorganic iodine and phosphotungstic acid produce overall contrast and differential tissue contrast for X-ray imaging at least as high as that obtained with osmium. The stains can be used after any common fixation and after storage in aqueous or alcoholic media, and on a wide variety of species. These methods establish microCT imaging as a useful tool for comparative developmental studies, embryo phenotyping, and quantitative modeling of development. (c) 2009 Wiley-Liss, Inc.

                Author and article information

                Contributors
                vanessapenna.vpg@gmail.com
                Journal
                J Comp Neurol
                J Comp Neurol
                10.1002/(ISSN)1096-9861
                CNE
                The Journal of Comparative Neurology
                John Wiley and Sons Inc. (Hoboken )
                0021-9967
                1096-9861
                20 January 2025
                January 2025
                : 533
                : 1 ( doiID: 10.1002/cne.v533.1 )
                : e70017
                Affiliations
                [ 1 ] School of Natural Sciences Macquarie University Sydney New South Wales Australia
                [ 2 ] School of BioSciences University of Melbourne Parkville Victoria Australia
                [ 3 ] Zoological Institute and Museum University of Greifswald Greifswald Germany
                [ 4 ] School of Geography, Earth and Atmospheric Sciences University of Melbourne Parkville Victoria Australia
                [ 5 ] School of Science Edith Cowan University Perth Western Australia Australia
                [ 6 ] Centre for Taxonomy and Morphology Leibniz Institute for the Analysis of Biodiversity Change Hamburg Germany
                [ 7 ] Department of Biology University of Hamburg Hamburg Germany
                Author notes
                [*] [* ] Correspondence: Vanessa Penna‐Gonçalves ( vanessapenna.vpg@ 123456gmail.com )

                Author information
                https://orcid.org/0009-0007-7403-347X
                Article
                CNE70017
                10.1002/cne.70017
                11937621
                39833126
                c455d02c-e816-4be3-a4ac-6422488b7f6c
                © 2025 The Author(s). The Journal of Comparative Neurology published by Wiley Periodicals LLC.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 09 December 2024
                : 19 April 2024
                : 30 December 2024
                Page count
                Figures: 7, Tables: 2, Pages: 13, Words: 8484
                Funding
                Funded by: Environmental Microbiology Research Initiative
                Funded by: Association for the Study of Animal Behaviour , doi 10.13039/501100000530;
                Funded by: Holsworth Wildlife Research Endowment , doi 10.13039/100008190;
                Categories
                Research Article
                Research Article
                Custom metadata
                2.0
                January 2025
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.5.4 mode:remove_FC converted:26.03.2025

                Neurology
                brain,central nervous system,microct,spiders,staining solution rrid:ncbitaxon_74971
                Neurology
                brain, central nervous system, microct, spiders, staining solution rrid:ncbitaxon_74971

                Comments

                Comment on this article

                Related Documents Log