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      Laccase versus Laccase-Like Multi-Copper Oxidase: A Comparative Study of Similar Enzymes with Diverse Substrate Spectra

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          Abstract

          Laccases (EC 1.10.3.2) are multi-copper oxidases that catalyse the one-electron oxidation of a broad range of compounds including substituted phenols, arylamines and aromatic thiols to the corresponding radicals. Owing to their broad substrate range, copper-containing laccases are versatile biocatalysts, capable of oxidizing numerous natural and non-natural industry-relevant compounds, with water as the sole by-product. In the present study, 10 of the 11 multi-copper oxidases, hitherto considered to be laccases, from fungi, plant and bacterial origin were compared. A substrate screen of 91 natural and non-natural compounds was recorded and revealed a fairly broad but distinctive substrate spectrum amongst the enzymes. Even though the enzymes share conserved active site residues we found that the substrate ranges of the individual enzymes varied considerably. The EC classification is based on the type of chemical reaction performed and the actual name of the enzyme often refers to the physiological substrate. However, for the enzymes studied in this work such classification is not feasible, even more so as their prime substrates or natural functions are mainly unknown. The classification of multi-copper oxidases assigned as laccases remains a challenge. For the sake of simplicity we propose to introduce the term “laccase-like multi-copper oxidase” (LMCO) in addition to the term laccase that we use exclusively for the enzyme originally identified from the sap of the lacquer tree Rhus vernicifera.

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          Multicopper Oxidases and Oxygenases.

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            Laccases: a never-ending story.

            Laccases (benzenediol:oxygen oxidoreductases, EC 1.10.3.2) are blue multicopper oxidases that catalyze the oxidation of an array of aromatic substrates concomitantly with the reduction of molecular oxygen to water. In fungi, laccases carry out a variety of physiological roles during their life cycle. These enzymes are being increasingly evaluated for a variety of biotechnological applications due to their broad substrate range. In this review, the most recent studies on laccase structural features and catalytic mechanisms along with analyses of their expression are reported and examined with the aim of contributing to the discussion on their structure-function relationships. Attention has also been paid to the properties of enzymes endowed with unique characteristics and to fungal laccase multigene families and their organization.
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              Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences.

              A phylogenetic analysis of more than 350 multicopper oxidases (MCOs) from fungi, insects, plants, and bacteria provided the basis for a refined classification of this enzyme family into laccases sensu stricto (basidiomycetous and ascomycetous), insect laccases, fungal pigment MCOs, fungal ferroxidases, ascorbate oxidases, plant laccase-like MCOs, and bilirubin oxidases. Within the largest group of enzymes, formed by the 125 basidiomycetous laccases, the gene phylogeny does not strictly follow the species phylogeny. The enzymes seem to group at least partially according to the lifestyle of the corresponding species. Analyses of the completely sequenced fungal genomes showed that the composition of MCOs in the different species can be very variable. Some species seem to encode only ferroxidases, whereas others have proteins which are distributed over up to four different functional clusters in the phylogenetic tree.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                3 June 2013
                : 8
                : 6
                : e65633
                Affiliations
                [1 ]Laboratory for Biomaterials, Empa, Swiss Federal Laboratories for Materials Science and Technology, St. Gallen, Switzerland
                [2 ]Givaudan Schweiz AG, Dübendorf, Switzerland
                Instituto de Tecnologica Química e Biológica, UNL, Portugal
                Author notes

                Competing Interests: Eric Eichhorn and Boris Schilling are employed by Givaudan Schweiz AG. The results reported in this paper, in particular the substrate screen, were obtained in a collaboration between Empa and Givaudan, which was financed by the mentioned CTI grant of the Swiss Federation to support industrially relevant research. The company holds a patent on the production of natural flavors by laccase catalysis (EP 1 083 233 B1) with the priority date of 08.09.1999 from US 391785 application. However, the results of the present study did not result in the discovery of new flavors and are not connected to this IP in any way, which made it possible to publish them. Givaudan agrees with this policy, as there are no patent applications pending or planned on the subject of the authors' results and no products in development or marketed products to declare. The fact, that part of the authors' results stem from this industry collaboration, therefore, and in agreement with Givaudan, does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials.

                Conceived and designed the experiments: RR JI LTM EE BS. Performed the experiments: RR. Analyzed the data: RR JI MR. Contributed reagents/materials/analysis tools: EE BS. Wrote the paper: RR MR JI LTM. Obtained the plasmid pLOM10 from L. O. Martins: JI.

                Article
                PONE-D-13-08992
                10.1371/journal.pone.0065633
                3670849
                23755261
                c50e65ac-eec0-4aeb-9be7-e34b63bc3800
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 1 March 2013
                : 26 April 2013
                Page count
                Pages: 10
                Funding
                This work was supported by the CTI project 11647.2 PFLS-LS, http://www.kti.admin.ch. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology
                Biochemistry
                Enzymes
                Enzyme Classes
                Biocatalysis
                Biotechnology
                Biocatalysis
                Microbiology
                Chemistry
                Chemical Reactions
                Catalysis
                Biocatalysis
                Oxidation-Reduction Reactions
                Electrochemistry
                Oxidation-Reduction Reactions

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                Uncategorized

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