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      An Epidemic of Dengue-1 in a Remote Village in Rural Laos

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          Abstract

          In the Lao PDR (Laos), urban dengue is an increasingly recognised public health problem. We describe a dengue-1 virus outbreak in a rural northwestern Lao forest village during the cool season of 2008. The isolated strain was genotypically “endemic” and not “sylvatic,” belonging to the genotype 1, Asia 3 clade. Phylogenetic analyses of 37 other dengue-1 sequences from diverse areas of Laos between 2007 and 2010 showed that the geographic distribution of some strains remained focal overtime while others were dispersed throughout the country. Evidence that dengue viruses have broad circulation in the region, crossing country borders, was also obtained. Whether the outbreak arose from dengue importation from an urban centre into a dengue-naïve community or crossed into the village from a forest cycle is unknown. More epidemiological and entomological investigations are required to understand dengue epidemiology and the importance of rural and forest dengue dynamics in Laos.

          Author Summary

          Dengue disease is caused by a virus transmitted by mosquitoes. In Southeast Asia, where it is endemic, it represents a very important public health problem. Major outbreaks, including severe cases and death, occur every year. Two distinct transmission cycles have been described. Most common is the human-mosquito-human cycle observed throughout most tropical regions of the world, often associated with urban locations and always human habitations, often producing explosive outbreaks, whereas “sylvatic” dengue, genetically different, circulates in forest wild animals and has been reported to be able to infect humans. In the Lao PDR, a developing country where dengue is endemic, data on this disease are sparse. This study reports an unusual outbreak of dengue that occurred during the cold season in a village in a forested area. It also is the first extensive analysis of dengue virus nucleotide sequences, from 39 patients across the country, from Laos. Results suggest three patterns of dengue circulation in Laos: local transmission, transmission over the whole country, and transmission implicating bordering countries. The dengue virus isolated from patients in the forest village outbreak proved to be genetically similar to those found in urbanized areas throughout the country. More investigations are needed to understand the relationships between dengue in forested and urban areas.

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          Most cited references28

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          Extreme genome reduction in symbiotic bacteria.

          Since 2006, numerous cases of bacterial symbionts with extraordinarily small genomes have been reported. These organisms represent independent lineages from diverse bacterial groups. They have diminutive gene sets that rival some mitochondria and chloroplasts in terms of gene numbers and lack genes that are considered to be essential in other bacteria. These symbionts have numerous features in common, such as extraordinarily fast protein evolution and a high abundance of chaperones. Together, these features point to highly degenerate genomes that retain only the most essential functions, often including a considerable fraction of genes that serve the hosts. These discoveries have implications for the concept of minimal genomes, the origins of cellular organelles, and studies of symbiosis and host-associated microbiota.
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            Analyzing the mosaic structure of genes.

            Some genes in prokaryotes consist of a mosaic of regions derived from different ancestors by horizontal gene transfer. A method is described for demonstrating the statistical significance of such mosaic structure and for locating the crossover points separating different regions.
              Bookmark
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              A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.

              We have developed a modified BOOTSCAN algorithm that may be used to screen nucleotide sequence alignments for evidence of recombination without prior identification of nonrecombinant reference sequences. The algorithm is fast and includes a Bonferroni corrected statistical test of recombination to circumvent the multiple testing problems encountered when using the BOOTSCAN method to explore alignments for evidence of recombination. Using both simulated and real datasets we demonstrate that the modified algorithm is more powerful than other phylogenetic recombination detection methods and performs almost as well as one of the best substitution distribution recombination detection methods.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, USA )
                1935-2727
                1935-2735
                August 2013
                8 August 2013
                : 7
                : 8
                : e2360
                Affiliations
                [1 ]UMR_D 190 Emergence des Pathologies Virales, Aix-Marseille Université, IRD French Institute of Research for Development, EHESP French School of Public Health, Marseille, France
                [2 ]Lao-Oxford-Mahosot Hospital - Wellcome Trust Research Unit (LOMWRU), Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic
                [3 ]Centre for Tropical Medicine, Nuffield Department of Clinical Medicine, University of Oxford, Churchill Hospital, Oxford, United Kingdom
                [4 ]National Centre for Laboratory and Epidemiology, Ministry of Health, Vientiane, Lao People's Democratic Republic
                [5 ]World Health Organization – Lao People's Democratic Republic, Vientiane, Lao People's Democratic Republic
                [6 ]Xayabury Provincial Health Department, Xayabury, Lao People's Democratic Republic
                University of California, Davis, United States of America
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: PNN XdL ADP. Performed the experiments: ADP MV TT AC CEM RP BSi JCV. Analyzed the data: ADP XdL PNN. Wrote the paper: ADP XdL PNN. Outbreak investigation and sample collection: PV JD SL BSe AK VX.

                Article
                PNTD-D-13-00088
                10.1371/journal.pntd.0002360
                3738459
                23951379
                c69d940f-bbbc-40e8-be1b-3a61b47162ee
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 29 November 2013
                : 28 June 2013
                Page count
                Pages: 11
                Funding
                The outbreak investigation was funded by Government of Luxemburg through the World Health Organisation and the laboratory analysis by IRD and the Wellcome Trust of Great Britain. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology
                Genomics
                Genome Sequencing
                Medicine
                Epidemiology
                Molecular Epidemiology
                Infectious Diseases
                Neglected Tropical Diseases
                Dengue Fever
                Viral Diseases
                Dengue

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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