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      Elucidating the Binding Mechanism of a Novel Silica-Binding Peptide

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          Abstract

          Linker-protein G (LPG) is a bifunctional fusion protein composed of a solid-binding peptide (SBP, referred as the “linker”) with high affinity to silica-based compounds and a Streptococcus protein G (PG), which binds antibodies. The binding mechanisms of LPG to silica-based materials was studied using different biophysical techniques and compared to that of PG without the linker. LPG displayed high binding affinity to a silica surface ( K D = 34.77 ± 11.8 nM), with a vertical orientation, in comparison to parent PG, which exhibited no measurable binding affinity. Incorporation of the linker in the fusion protein, LPG, had no effect on the antibody-binding function of PG, which retained its secondary structure and displayed no alteration of its chemical stability. The LPG system provided a milder, easier, and faster affinity-driven immobilization of antibodies to inorganic surfaces when compared to traditional chemical coupling techniques.

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          Most cited references29

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          Quantum dot bioconjugates for ultrasensitive nonisotopic detection.

          W Chan, S Nie (1998)
          Highly luminescent semiconductor quantum dots (zinc sulfide-capped cadmium selenide) have been covalently coupled to biomolecules for use in ultrasensitive biological detection. In comparison with organic dyes such as rhodamine, this class of luminescent labels is 20 times as bright, 100 times as stable against photobleaching, and one-third as wide in spectral linewidth. These nanometer-sized conjugates are water-soluble and biocompatible. Quantum dots that were labeled with the protein transferrin underwent receptor-mediated endocytosis in cultured HeLa cells, and those dots that were labeled with immunomolecules recognized specific antibodies or antigens.
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            Quartz crystal microbalance: a useful tool for studying thin polymer films and complex biomolecular systems at the solution-surface interface.

            The quartz crystal microbalance (QCM) is a simple, cost effective, high-resolution mass sensing technique, based upon the piezoelectric effect. As a methodology, the QCM evolved a solution measurement capability in largely analytical chemistry and electrochemistry applications due to its sensitive solution-surface interface measurement capability. The technique possesses a wide detection range. At the low mass end, it can detect monolayer surface coverage by small molecules or polymer films. At the upper end, it is capable of detecting much larger masses bound to the surface. These can be complex arrays of biopolymers and biomacromolecules, even whole cells. In addition, the QCM can provide information about the energy dissipating properties of the bound surface mass. Another important and unique feature of the technique is the ability to measure mass and energy dissipation properties of films while simultaneously carrying out electrochemistry on solution species or upon film systems bound to the upper electrode on the oscillating quartz crystal surface. These measurements can describe the course of electropolymerization of a film or can reveal ion or solute transport within a film during changes in the film environment or state, including the oxidation state for an electroactive film driven by the underlying surface potential. The past decade has witnessed an explosive growth in the application of the QCM technique to the study of a wide range of molecular systems at the solution-surface interface, in particular, biopolymer and biochemical systems. In this report, we start with a brief historical and technical overview. Then we discuss the application of the QCM technique to measurements involving micellar systems, self-assembling monolayers and their phase transition behavior, molecularly imprinted polymers, chemical sensors, films formed using the layer-by-layer assembly technique, and biopolymer films and point out the utility of the electrochemical capabilities of the technique to characterizing film properties, especially electroactive polymer films. We also describe the wide range of surface chemistries and attachment strategies used by investigators to bring about surface attachment and multi-layer interactions of these thin film systems. Next we review the wide range of recent applications of the technique to: studies of complex biochemical and biomimetic systems, the creation of protein and nucleic acid biosensors, studies of attached living cells and whole cell biosensor applications. Finally, we discuss future technical directions and applications of the QCM technique to areas such as drug discovery.
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              A comparative study of protein adsorption on titanium oxide surfaces using in situ ellipsometry, optical waveguide lightmode spectroscopy, and quartz crystal microbalance/dissipation

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                Author and article information

                Journal
                Biomolecules
                Biomolecules
                biomolecules
                Biomolecules
                MDPI
                2218-273X
                18 December 2019
                January 2020
                : 10
                : 1
                : 4
                Affiliations
                [1 ]Department of Molecular Sciences, Macquarie University, Sydney NSW 2109, Australia; rachit.bansal@ 123456hdr.mq.edu.au (R.B.); andrew.care@ 123456mq.edu.au (A.C.); sophie.goodchild@ 123456mq.edu.au (S.C.G.); alison.rodger@ 123456mq.edu.au (A.R.)
                [2 ]ARC Centre of Excellence for Nanoscale Biophotonics, Macquarie University, Sydney NSW 2109, Australia
                [3 ]Graduate School of Biomedical Engineering, University of New South Wales, Sydney NSW 2052, Australia; z.elgundi@ 123456unsw.edu.au (Z.E.); m.lord@ 123456unsw.edu.au (M.S.L.)
                [4 ]Biomolecular Discovery and Design Research Centre, Macquarie University, Sydney NSW 2109, Australia
                Author notes
                [* ]Correspondence: anwar.sunna@ 123456mq.edu.au ; Tel.: +612-9850-4220
                Author information
                https://orcid.org/0000-0003-4777-5949
                https://orcid.org/0000-0002-0035-7961
                https://orcid.org/0000-0002-5091-7576
                https://orcid.org/0000-0002-0506-9811
                https://orcid.org/0000-0002-1467-9937
                Article
                biomolecules-10-00004
                10.3390/biom10010004
                7022404
                31861313
                c6cdab81-0707-40a2-afe2-86a11bdc4f65
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 17 November 2019
                : 16 December 2019
                Categories
                Article

                solid-binding peptides (sbps),linker-protein g (lpg),surface plasmon resonance (spr),quartz crystal microbalance with dissipation monitoring (qcm-d),circular dichroism (cd) spectrometry,equilibrium dissociation constant (kd)

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