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      First genetically confirmed records of the little gulper shark Centrophorusuyato (Squaliformes: Centrophoridae) from Cypriot waters

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          Abstract

          The taxonomy within the genus Centrophorus has been controversial almost since its origin, raising uncertainties about the identification, the phylogenetic placement and the geographical distribution of several species. The partial nucleotide sequences of two mitochondrial DNA gene regions, the cytochrome c oxidase subunit I and the 16S ribosomal RNA, genetically confirmed the presence of the little gulper shark in Cypriot waters. The species presence in the Mediterranean Sea is revised and discussed.

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          Most cited references 35

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

            Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key contribution to researchers in the life sciences is the Geneious public application programming interface (API) that affords the ability to leverage the existing framework of the Geneious Basic software platform for virtually unlimited extension and customization. The result is an increase in the speed and quality of development of computation tools for the life sciences, due to the functionality and graphical user interface available to the developer through the public API. Geneious Basic represents an ideal platform for the bioinformatics community to leverage existing components and to integrate their own specific requirements for the discovery, analysis and visualization of biological data. Availability and implementation: Binaries and public API freely available for download at http://www.geneious.com/basic, implemented in Java and supported on Linux, Apple OSX and MS Windows. The software is also available from the Bio-Linux package repository at http://nebc.nerc.ac.uk/news/geneiousonbl. Contact: peter@biomatters.com
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              A DNA Sequence–Based Approach To the Identification of Shark and Ray Species and Its Implications for Global Elasmobranch Diversity and Parasitology

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                Author and article information

                Contributors
                Journal
                Biodivers Data J
                Biodivers Data J
                1
                urn:lsid:arphahub.com:pub:F9B2E808-C883-5F47-B276-6D62129E4FF4
                urn:lsid:zoobank.org:pub:245B00E9-BFE5-4B4F-B76E-15C30BA74C02
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2836
                1314-2828
                2021
                16 September 2021
                : 9
                Affiliations
                [1 ] Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 00, Prague, Czech Republic Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 00 Prague Czech Republic
                [2 ] Fisheries Research Institute, Hellenic Agricultural Organization, 640 07, Nea Peramos, Kavala, Greece Fisheries Research Institute, Hellenic Agricultural Organization, 640 07 Nea Peramos, Kavala Greece
                [3 ] Enalia Physis Environmental Research Centre, Acropoleos 2, Aglantzia 2101, Nicosia, Cyprus Enalia Physis Environmental Research Centre, Acropoleos 2, Aglantzia 2101 Nicosia Cyprus
                [4 ] Department of Fisheries and Marine Research, Ministry of Agriculture, Natural Resources and Environment, Nicosia, Cyprus Department of Fisheries and Marine Research, Ministry of Agriculture, Natural Resources and Environment Nicosia Cyprus
                [5 ] Cyprus Marine and Maritime Institute, CMMI House Vasileos Pavlou Square, PO Box 409 30, Larnaca, Cyprus Cyprus Marine and Maritime Institute, CMMI House Vasileos Pavlou Square, PO Box 409 30 Larnaca Cyprus
                Author notes
                Corresponding author: Vasiliki Kousteni ( kousteni@ 123456inale.gr ).

                Academic editor: Felipe Ottoni

                Article
                71837 16666
                10.3897/BDJ.9.e71837
                8460593
                Vasiliki Kousteni, Marios Papageorgiou, Michail Rovatsos, Ioannis Thasitis, Louis Hadjioannou

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                Page count
                Figures: 4, Tables: 0, References: 33
                Categories
                Short Communication

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