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      T Cell Receptor-Independent Basal Signaling via Erk and Abl Kinases Suppresses RAG Gene Expression

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          Abstract

          Signal transduction pathways guided by cellular receptors commonly exhibit low-level constitutive signaling in a continuous, ligand-independent manner. The dynamic equilibrium of positive and negative regulators establishes such a tonic signal. Ligand-independent signaling by the precursors of mature antigen receptors regulates development of B and T lymphocytes. Here we describe a basal signal that controls gene expression profiles in the Jurkat T cell line and mouse thymocytes. Using DNA microarrays and Northern blots to analyze unstimulated cells, we demonstrate that expression of a cluster of genes, including RAG-1 and RAG-2, is repressed by constitutive signals requiring the adapter molecules LAT and SLP-76. This TCR-like pathway results in constitutive low-level activity of Erk and Abl kinases. Inhibition of Abl by the drug STI-571 or inhibition of signaling events upstream of Erk increases RAG-1 expression. Our data suggest that physiologic gene expression programs depend upon tonic activity of signaling pathways independent of receptor ligation.

          Abstract

          In the absence of basal signaling, RAG activity is high at a time during T cell development when it is otherwise normally suppressed

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          Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

          A new method of total RNA isolation by a single extraction with an acid guanidinium thiocyanate-phenol-chloroform mixture is described. The method provides a pure preparation of undegraded RNA in high yield and can be completed within 4 h. It is particularly useful for processing large numbers of samples and for isolation of RNA from minute quantities of cells or tissue samples.
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            Structural mechanism for STI-571 inhibition of abelson tyrosine kinase.

            The inadvertent activation of the Abelson tyrosine kinase (Abl) causes chronic myelogenous leukemia (CML). A small-molecule inhibitor of Abl (STI-571) is effective in the treatment of CML. We report the crystal structure of the catalytic domain of Abl, complexed to a variant of STI-571. Critical to the binding of STI-571 is the adoption by the kinase of an inactive conformation, in which a centrally located "activation loop" is not phosphorylated. The conformation of this loop is distinct from that in active protein kinases, as well as in the inactive form of the closely related Src kinases. These results suggest that compounds that exploit the distinctive inactivation mechanisms of individual protein kinases can achieve both high affinity and high specificity.
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              Neonatal lethality and lymphopenia in mice with a homozygous disruption of the c-abl proto-oncogene.

              The c-abl proto-oncogene, which encodes a cytoplasmic protein-tyrosine kinase, is expressed throughout murine gestation and ubiquitously in adult mouse tissues. However, its levels are highest in thymus, spleen, and testes. To examine the in vivo role of c-abl, the gene was disrupted in embryonic stem cells, and the resulting genetically modified cells were used to establish a mouse strain carrying the mutation. Most mice homozygous for the c-abl mutation became runted and died 1 to 2 weeks after birth. In addition, many showed thymic and splenic atrophy and a T and B cell lymphopenia.
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                Author and article information

                Journal
                PLoS Biol
                pbio
                PLoS Biology
                Public Library of Science (San Francisco, USA )
                1544-9173
                1545-7885
                November 2003
                17 November 2003
                : 1
                : 2
                : e53
                Affiliations
                [1] 1Department of Medicine, University of California San Francisco, San Francisco, CaliforniaUnited States of America
                [2] 2Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CaliforniaUnited States of America
                [3] 3Department of Biochemistry, Stanford University School of Medicine Stanford, CaliforniaUnited States of America
                [4] 4Department of Genetics, Stanford University School of Medicine Stanford, CaliforniaUnited States of America
                [5] 5Howard Hughes Medical Institute, Stanford University School of Medicine Stanford, CaliforniaUnited States of America
                [6] 6Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CaliforniaUnited States of America
                [7] 7Rosalind Russell Medical Research Center for Arthritis, University of California San Francisco, San Francisco, CaliforniaUnited States of America
                Article
                10.1371/journal.pbio.0000053
                261890
                14624253
                ca068e48-1ca5-4d31-8d0e-5822cb0ad0bf
                Copyright: ©2003 Roose et al. This is an open-access article distributed under the terms of the Public Library of Science Open-Access License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited
                History
                : 28 July 2003
                : 17 September 2003
                Categories
                Research Article
                Cell Biology
                Immunology
                Molecular Biology/Structural Biology
                Mus (Mouse)

                Life sciences
                Life sciences

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