PCR-RFLP-based identification of polymorphisms in BMPR1B, GDF9 and BMP15 genes associated with litter size in Beetal and Teddy goats

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Abstract

The genes BMPR1B, GDF9 and BMP15 are oocyte-derived members of the transforming growth factor-β superfamily, which is essential for follicular growth and ovulation. The aim of the current study was to determine the incidence of reported mutations in exon 3 of BMPR1B gene, exon 1 of GDF9 gene, and exon 2 of BMP15 gene and their association with litter size in three parities of Beetal and Teddy goats. Based on the known mutations in these genes, PCR primers were designed to find out the polymorphism through the PCR-RFLP technique in 120 randomly selected animals of the two breeds, which vary in their prolificacy. The current results show that there were significant differences in litter size [1.708 ± 0.060 in Beetal (B) and 2.167 ± 0.056 in Teddy (T) goats] in both breeds. The results of breed x parity interaction showed significant differences in litter size in first [1.158 ± 0.061 (B); 1.861 ± 0.057 (T)], third [2.062 ± 0.078 (B); 2.583 ± 0.073 (T)] and average parity [708 ± 0.060 (B); 2.167 ± 0.056 (T)] in both breeds. All three loci in both breeds were found to be polymorphic and the results of breed x parity x genotype analysis showed that genotypes of all the three genes were significantly associated with litter size in all parities in both breeds. For the BMPR1B gene, heterozygous (CT) animals of Beetal and Teddy goats had the largest litter size in all three parities and the average (parity) litter size, showing the overdominance of the heterozygotes. Similarly, for GDF9 gene, heterozygous animals (AG) had the largest litter size in both breeds. For BMP15 gene homozygous carrier animals (CC) of both breeds had the highest number of kids, followed by the heterozygous (AC) genotypes. The current results show the importance of BMPR1B, GDF9 and BMP15 as the major genes that influence prolificacy in both Beetal and Teddy goats. It is suggested that these polymorphisms can be used as molecular markers to select the prolific animals in these breeds.

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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Sudhir Kumar, Glen Stecher, Koichiro Tamura (2016)

We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.

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A new polymorphism in the Growth and Differentiation Factor 9 (GDF9) gene is associated with increased ovulation rate and prolificacy in homozygous sheep.

Dinorah P E Castro, S Paiva, L J P F Neves … (2011)

Brazilian Santa Inês (SI) sheep are very well-adapted to the tropical conditions of Brazil and are an important source of animal protein. A high rate of twin births was reported in some SI flocks. Growth and Differentiation Factor 9 (GDF9) and Bone Morphogenetic Protein 15 (BMP15) are the first two genes expressed by the oocyte to be associated with an increased ovulation rate in sheep. All GDF9 and BMP15 variants characterized, until now, present the same phenotype: the heterozygote ewes have an increased ovulation rate and the mutated homozygotes are sterile. In this study, we have found a new allele of GDF9, named FecG(E) (Embrapa), which leads to a substitution of a phenylalanine with a cysteine in a conservative position of the mature peptide. Homozygote ewes presenting the FecG(E) allele have shown an increase in their ovulation rate (82%) and prolificacy (58%). This new phenotype can be very useful in better understanding the genetic control of follicular development; the mechanisms involved in the control of ovulation rate in mammals; and for the improvement of sheep production. © 2010 The Authors, Animal Genetics © 2010 Stichting International Foundation for Animal Genetics.