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      Deep Learning to Assess Long-term Mortality From Chest Radiographs

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      , MD, MPH 1 , , , BS 1 , , PhD 1 , 2 , , MS 3 , , PhD 3 , , MD, MPH 1
      JAMA Network Open
      American Medical Association

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          Abstract

          This prognostic study develops and tests a convoluted neural network (CXR-risk) to predict long-term mortality from chest radiographs.

          Key Points

          Question

          Is a convolutional neural network able to extract prognostic information from chest radiographs?

          Findings

          In this prognostic study of data from 2 randomized clinical trials (Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial [n = 10 464] and National Lung Screening Trial [n = 5493]), a convolutional neural network identified persons at high risk of long-term mortality based on their chest radiographs, even with adjustment for the radiologists' diagnostic findings and standard risk factors.

          Meaning

          Individuals at high risk of mortality based on chest radiography may benefit from prevention, screening, and lifestyle interventions.

          Abstract

          Importance

          Chest radiography is the most common diagnostic imaging test in medicine and may also provide information about longevity and prognosis.

          Objective

          To develop and test a convolutional neural network (CNN) (named CXR-risk) to predict long-term mortality, including noncancer death, from chest radiographs.

          Design, Setting, and Participants

          In this prognostic study, CXR-risk CNN development (n = 41 856) and testing (n = 10 464) used data from the screening radiography arm of the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO) (n = 52 320), a community cohort of asymptomatic nonsmokers and smokers (aged 55-74 years) enrolled at 10 US sites from November 8, 1993, through July 2, 2001. External testing used data from the screening radiography arm of the National Lung Screening Trial (NLST) (n = 5493), a community cohort of heavy smokers (aged 55-74 years) enrolled at 21 US sites from August 2002, through April 2004. Data analysis was performed from January 1, 2018, to May 23, 2019.

          Exposure

          Deep learning CXR-risk score (very low, low, moderate, high, and very high) based on CNN analysis of the enrollment radiograph.

          Main Outcomes and Measures

          All-cause mortality. Prognostic value was assessed in the context of radiologists’ diagnostic findings (eg, lung nodule) and standard risk factors (eg, age, sex, and diabetes) and for cause-specific mortality.

          Results

          Among 10 464 PLCO participants (mean [SD] age, 62.4 [5.4] years; 5405 men [51.6%]; median follow-up, 12.2 years [interquartile range, 10.5-12.9 years]) and 5493 NLST test participants (mean [SD] age, 61.7 [5.0] years; 3037 men [55.3%]; median follow-up, 6.3 years [interquartile range, 6.0-6.7 years]), there was a graded association between CXR-risk score and mortality. The very high-risk group had mortality of 53.0% (PLCO) and 33.9% (NLST), which was higher compared with the very low-risk group (PLCO: unadjusted hazard ratio [HR], 18.3 [95% CI, 14.5-23.2]; NLST: unadjusted HR, 15.2 [95% CI, 9.2-25.3]; both P < .001). This association was robust to adjustment for radiologists’ findings and risk factors (PLCO: adjusted HR [aHR], 4.8 [95% CI, 3.6-6.4]; NLST: aHR, 7.0 [95% CI, 4.0-12.1]; both P < .001). Comparable results were seen for lung cancer death (PLCO: aHR, 11.1 [95% CI, 4.4-27.8]; NLST: aHR, 8.4 [95% CI, 2.5-28.0]; both P ≤ .001) and for noncancer cardiovascular death (PLCO: aHR, 3.6 [95% CI, 2.1-6.2]; NLST: aHR, 47.8 [95% CI, 6.1-374.9]; both P < .001) and respiratory death (PLCO: aHR, 27.5 [95% CI, 7.7-97.8]; NLST: aHR, 31.9 [95% CI, 3.9-263.5]; both P ≤ .001).

          Conclusions and Relevance

          In this study, the deep learning CXR-risk score stratified the risk of long-term mortality based on a single chest radiograph. Individuals at high risk of mortality may benefit from prevention, screening, and lifestyle interventions.

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          Most cited references29

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          2013 ACC/AHA Guideline on the Treatment of Blood Cholesterol to Reduce Atherosclerotic Cardiovascular Risk in Adults

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              Coronary calcium as a predictor of coronary events in four racial or ethnic groups.

              In white populations, computed tomographic measurements of coronary-artery calcium predict coronary heart disease independently of traditional coronary risk factors. However, it is not known whether coronary-artery calcium predicts coronary heart disease in other racial or ethnic groups. We collected data on risk factors and performed scanning for coronary calcium in a population-based sample of 6722 men and women, of whom 38.6% were white, 27.6% were black, 21.9% were Hispanic, and 11.9% were Chinese. The study subjects had no clinical cardiovascular disease at entry and were followed for a median of 3.8 years. There were 162 coronary events, of which 89 were major events (myocardial infarction or death from coronary heart disease). In comparison with participants with no coronary calcium, the adjusted risk of a coronary event was increased by a factor of 7.73 among participants with coronary calcium scores between 101 and 300 and by a factor of 9.67 among participants with scores above 300 (P<0.001 for both comparisons). Among the four racial and ethnic groups, a doubling of the calcium score increased the risk of a major coronary event by 15 to 35% and the risk of any coronary event by 18 to 39%. The areas under the receiver-operating-characteristic curves for the prediction of both major coronary events and any coronary event were higher when the calcium score was added to the standard risk factors. The coronary calcium score is a strong predictor of incident coronary heart disease and provides predictive information beyond that provided by standard risk factors in four major racial and ethnic groups in the United States. No major differences among racial and ethnic groups in the predictive value of calcium scores were detected. Copyright 2008 Massachusetts Medical Society.
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                Author and article information

                Journal
                JAMA Netw Open
                JAMA Netw Open
                JAMA Netw Open
                JAMA Network Open
                American Medical Association
                2574-3805
                19 July 2019
                July 2019
                19 July 2019
                : 2
                : 7
                : e197416
                Affiliations
                [1 ]Cardiovascular Imaging Research Center, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston
                [2 ]School of Business Studies, Stralsund University of Applied Sciences, Stralsund, Germany
                [3 ]Department of Radiation Oncology and Radiology, Dana Farber Cancer Institute, Brigham and Women’s Hospital, Harvard Medical School, Boston, Massachusetts
                Author notes
                Article Information
                Accepted for Publication: May 30, 2019.
                Published: July 19, 2019. doi:10.1001/jamanetworkopen.2019.7416
                Open Access: This is an open access article distributed under the terms of the CC-BY License. © 2019 Lu MT et al. JAMA Network Open.
                Corresponding Author: Michael T. Lu, MD, MPH, Cardiovascular Imaging Research Center, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, 165 Cambridge St, Ste 400, Boston, MA 02114 ( mlu@ 123456mgh.harvard.edu ).
                Author Contributions: Dr Lu had full access to all of the data in the study and takes responsibility for the integrity of the data and the accuracy of the data analysis.
                Concept and design: Lu, Hoffmann.
                Acquisition, analysis, or interpretation of data: All authors.
                Drafting of the manuscript: Lu, Hoffmann.
                Critical revision of the manuscript for important intellectual content: All authors.
                Statistical analysis: Lu, Mayrhofer.
                Obtained funding: Lu.
                Administrative, technical, or material support: All authors.
                Supervision: Lu, Hoffmann.
                Conflict of Interest Disclosures: A graphics processing unit used for this research was donated to Dr Lu as an unrestricted gift through the Nvidia Corporation Academic Program. Dr Lu reported research funding to the institution from Kowa Company Limited and Medimmune, receiving personal fees from PQBypass, receiving grants from the American Heart Association Precision Medicine Institute, and the Harvard University Center For AIDS Research (National Institute of Allergy and Infectious Diseases, National Institutes of Health [NIH]) all outside the submitted work. Dr Aerts reported receiving personal fees from Sphera and Genospace outside the submitted work. Dr Hoffmann reported receiving research support on behalf of his institution from Duke University (Abbott), HeartFlow, Kowa Company Limited, and MedImmune; receiving grants from Oregon Health & Science University (American Heart Association), and Columbia University (NIH and National Heart, Lung, and Blood Institute); and receiving consulting fees from Abbott, Duke University (NIH), and Recor Medical unrelated to this research. No other disclosures were reported.
                Disclaimer: The statements contained herein are solely those of the authors and do not represent or imply concurrence or endorsements by any named organizations.
                Additional Contributions: The National Cancer Institute and the America College of Radiology Imaging Network (ACRIN) provided access to trial data. The fastai and PyTorch communities are acknowledged for development of open source software.
                Additional Information: Original data collection for the ACRIN 6654 trial (National Lung Screening Trial) was supported by National Cancer Institute Cancer Imaging Program grants. Prostate, Lung, Colorectal, and Ovarian trial data used for model development and testing are available from the National Cancer Institute. National Lung Screening Trial testing data is available from the National Cancer Institute and the ACRIN. The model code and weights from this study will be available at https://github.com/michaeltlu/cxr-risk.
                Article
                zoi190301
                10.1001/jamanetworkopen.2019.7416
                6646994
                31322692
                cb7e2e94-dd7b-462f-aa25-8a5d8e7481da
                Copyright 2019 Lu MT et al. JAMA Network Open.

                This is an open access article distributed under the terms of the CC-BY License.

                History
                : 27 February 2019
                : 30 May 2019
                Categories
                Research
                Original Investigation
                Online Only
                Health Informatics

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