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      IFITMs Restrict the Replication of Multiple Pathogenic Viruses

      review-article
      , , , *
      Journal of Molecular Biology
      Elsevier
      IFITM, interferon-inducible transmembrane protein, IFN, interferon, IAV, influenza A virus, DENV, dengue virus, SARS CoV, severe acute respiratory syndrome coronavirus, HCV, hepatitis C virus, EBOV, Ebola virus, MARV, Marburg virus, CIL, conserved intracellular loop, MS, mass spectrometry, NTD, N-terminal domain, RVFV, Rift Valley fever virus, HIV-1, human immunodeficiency virus type 1, JSRV, Jaagsiekte sheep retrovirus, GP, glycoprotein, CCHFV, Crimean Congo hemorrhagic fever virus, MLV, Moloney leukemia virus, SeV, Sendai virus, CMEM, clathrin-mediated endocytosis motif, AS, alanine scanning, VAPA, vesicle-associated membrane protein-A, OSBP, oxysterol binding protein, interferon effector genes, restriction factor, host virus interactions, IFITM, CD225 family

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          Abstract

          The interferon-inducible transmembrane protein (IFITM) family inhibits a growing number of pathogenic viruses, among them influenza A virus, dengue virus, hepatitis C virus, and Ebola virus. This review covers recent developments in our understanding of the IFITM's molecular determinants, potential mechanisms of action, and impact on pathogenesis.

          Graphical abstract

          Highlights

          • IFITMs are host intramembrane proteins that block viral fusion resulting in virus degradation.

          • IFITMs inhibit a growing number of pathogenic viruses, including influenza A virus, dengue virus, and Ebola virus.

          • Mice null for Ifitm3 exhibit increased disease severity when infected with the influenza A virus.

          • Patients expressing a variant allele of IFITM3 are more likely to develop severe influenza infection.

          • Recent work suggests that IFITMs may toughen the host membrane, thus preventing viral membrane fusion.

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          Most cited references108

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          Systematic and quantitative assessment of the ubiquitin-modified proteome.

          Despite the diverse biological pathways known to be regulated by ubiquitylation, global identification of substrates that are targeted for ubiquitylation has remained a challenge. To globally characterize the human ubiquitin-modified proteome (ubiquitinome), we utilized a monoclonal antibody that recognizes diglycine (diGly)-containing isopeptides following trypsin digestion. We identify ~19,000 diGly-modified lysine residues within ~5000 proteins. Using quantitative proteomics we monitored temporal changes in diGly site abundance in response to both proteasomal and translational inhibition, indicating both a dependence on ongoing translation to observe alterations in site abundance and distinct dynamics of individual modified lysines in response to proteasome inhibition. Further, we demonstrate that quantitative diGly proteomics can be utilized to identify substrates for cullin-RING ubiquitin ligases. Interrogation of the ubiquitinome allows for not only a quantitative assessment of alterations in protein homeostasis fidelity, but also identification of substrates for individual ubiquitin pathway enzymes. Copyright © 2011 Elsevier Inc. All rights reserved.
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            Signals for sorting of transmembrane proteins to endosomes and lysosomes.

            Sorting of transmembrane proteins to endosomes and lysosomes is mediated by signals present within the cytosolic domains of the proteins. Most signals consist of short, linear sequences of amino acid residues. Some signals are referred to as tyrosine-based sorting signals and conform to the NPXY or YXXO consensus motifs. Other signals known as dileucine-based signals fit [DE]XXXL[LI] or DXXLL consensus motifs. All of these signals are recognized by components of protein coats peripherally associated with the cytosolic face of membranes. YXXO and [DE]XXXL[LI] signals are recognized with characteristic fine specificity by the adaptor protein (AP) complexes AP-1, AP-2, AP-3, and AP-4, whereas DXXLL signals are recognized by another family of adaptors known as GGAs. Several proteins, including clathrin, AP-2, and Dab2, have been proposed to function as recognition proteins for NPXY signals. YXXO and DXXLL signals bind in an extended conformation to the mu2 subunit of AP-2 and the VHS domain of the GGAs, respectively. Phosphorylation events regulate signal recognition. In addition to peptide motifs, ubiquitination of cytosolic lysine residues also serves as a signal for sorting at various stages of the endosomal-lysosomal system. Conjugated ubiquitin is recognized by UIM, UBA, or UBC domains present within many components of the internalization and lysosomal targeting machinery. This complex array of signals and recognition proteins ensures the dynamic but accurate distribution of transmembrane proteins to different compartments of the endosomal-lysosomal system.
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              A class of membrane proteins shaping the tubular endoplasmic reticulum.

              How is the characteristic shape of a membrane bound organelle achieved? We have used an in vitro system to address the mechanism by which the tubular network of the endoplasmic reticulum (ER) is generated and maintained. Based on the inhibitory effect of sulfhydryl reagents and antibodies, network formation in vitro requires the integral membrane protein Rtn4a/NogoA, a member of the ubiquitous reticulon family. Both in yeast and mammalian cells, the reticulons are largely restricted to the tubular ER and are excluded from the continuous sheets of the nuclear envelope and peripheral ER. Upon overexpression, the reticulons form tubular membrane structures. The reticulons interact with DP1/Yop1p, a conserved integral membrane protein that also localizes to the tubular ER. These proteins share an unusual hairpin topology in the membrane. The simultaneous absence of the reticulons and Yop1p in S. cerevisiae results in disrupted tubular ER. We propose that these "morphogenic" proteins partition into and stabilize highly curved ER membrane tubules.
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                Author and article information

                Contributors
                Journal
                J Mol Biol
                J. Mol. Biol
                Journal of Molecular Biology
                Elsevier
                0022-2836
                1089-8638
                25 September 2013
                13 December 2013
                25 September 2013
                : 425
                : 24
                : 4937-4955
                Affiliations
                Microbiology and Physiological Systems (MaPS) Department, University of Massachusetts Medical School, Albert Sherman Center 8 1001, 368 Plantation Street, Worcester, MA 01655, USA
                Author notes
                [* ]Corresponding author. abraham.brass@ 123456umassmed.edu
                Article
                S0022-2836(13)00608-6
                10.1016/j.jmb.2013.09.024
                4121887
                24076421
                cb916dd0-104b-4b78-91c0-b956ac41ce25
                Copyright © 2013 Elsevier Ltd. All rights reserved.

                Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

                History
                : 19 August 2013
                : 18 September 2013
                : 19 September 2013
                Categories
                Article

                Molecular biology
                ifitm, interferon-inducible transmembrane protein,ifn, interferon,iav, influenza a virus,denv, dengue virus,sars cov, severe acute respiratory syndrome coronavirus,hcv, hepatitis c virus,ebov, ebola virus,marv, marburg virus,cil, conserved intracellular loop,ms, mass spectrometry,ntd, n-terminal domain,rvfv, rift valley fever virus,hiv-1, human immunodeficiency virus type 1,jsrv, jaagsiekte sheep retrovirus,gp, glycoprotein,cchfv, crimean congo hemorrhagic fever virus,mlv, moloney leukemia virus,sev, sendai virus,cmem, clathrin-mediated endocytosis motif,as, alanine scanning,vapa, vesicle-associated membrane protein-a,osbp, oxysterol binding protein,interferon effector genes,restriction factor,host virus interactions,ifitm,cd225 family

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