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      The Phenotypes of Fluctuating Flow: Development of Distribution Networks in Biology and the Trade-off between Efficiency, Cost, and Resilience

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          Abstract

          Complex distribution networks are pervasive in biology. Examples include nutrient transport in the slime mold \(Physarum\) \(polycephalum\) as well as mammalian and plant venation. Adaptive rules are believed to guide development of these networks and lead to a reticulate, hierarchically nested topology that is both efficient and resilient against perturbations. However, as of yet no mechanism is known that can generate such networks on all scales. We show how hierarchically organized reticulation can be generated and maintained through spatially collective load fluctuations on a particular length scale. We demonstrate that the resulting network topologies represent a trade-off between optimizing power dissipation, construction cost, and damage robustness and identify the Pareto-efficient front that evolution is expected to favor and select for. We show that the typical fluctuation length scale controls the position of the networks on the Pareto front and thus on the spectrum of venation phenotypes. We compare the Pareto archetypes predicted by our model with examples of real leaf networks.

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          Rules for biologically inspired adaptive network design.

          Transport networks are ubiquitous in both social and biological systems. Robust network performance involves a complex trade-off involving cost, transport efficiency, and fault tolerance. Biological networks have been honed by many cycles of evolutionary selection pressure and are likely to yield reasonable solutions to such combinatorial optimization problems. Furthermore, they develop without centralized control and may represent a readily scalable solution for growing networks in general. We show that the slime mold Physarum polycephalum forms networks with comparable efficiency, fault tolerance, and cost to those of real-world infrastructure networks--in this case, the Tokyo rail system. The core mechanisms needed for adaptive network formation can be captured in a biologically inspired mathematical model that may be useful to guide network construction in other domains.
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            Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space.

            Biological systems that perform multiple tasks face a fundamental trade-off: A given phenotype cannot be optimal at all tasks. Here we ask how trade-offs affect the range of phenotypes found in nature. Using the Pareto front concept from economics and engineering, we find that best-trade-off phenotypes are weighted averages of archetypes--phenotypes specialized for single tasks. For two tasks, phenotypes fall on the line connecting the two archetypes, which could explain linear trait correlations, allometric relationships, as well as bacterial gene-expression patterns. For three tasks, phenotypes fall within a triangle in phenotype space, whose vertices are the archetypes, as evident in morphological studies, including on Darwin's finches. Tasks can be inferred from measured phenotypes based on the behavior of organisms nearest the archetypes.
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              Control of leaf vascular patterning by polar auxin transport.

              The formation of the leaf vascular pattern has fascinated biologists for centuries. In the early leaf primordium, complex networks of procambial cells emerge from homogeneous subepidermal tissue. The molecular nature of the underlying positional information is unknown, but various lines of evidence implicate gradually restricted transport routes of the plant hormone auxin in defining sites of procambium formation. Here we show that a crucial member of the AtPIN family of auxin-efflux-associated proteins, AtPIN1, is expressed prior to pre-procambial and procambial cell fate markers in domains that become restricted toward sites of procambium formation. Subcellular AtPIN1 polarity indicates that auxin is directed to distinct "convergence points" in the epidermis, from where it defines the positions of major veins. Integrated polarities in all emerging veins indicate auxin drainage toward pre-existing veins, but veins display divergent polarities as they become connected at both ends. Auxin application and transport inhibition reveal that convergence point positioning and AtPIN1 expression domain dynamics are self-organizing, auxin-transport-dependent processes. We derive a model for self-regulated, reiterative patterning of all vein orders and postulate at its onset a common epidermal auxin-focusing mechanism for major-vein positioning and phyllotactic patterning.
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                Author and article information

                Journal
                2017-07-10
                Article
                1707.03074
                cc0fb464-acf3-4c10-8c8c-89f557fa35d0

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

                History
                Custom metadata
                20 pages, 8 figures
                nlin.AO physics.bio-ph q-bio.TO

                Biophysics,Nonlinear & Complex systems,Life sciences
                Biophysics, Nonlinear & Complex systems, Life sciences

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