51
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Diffusible iodine‐based contrast‐enhanced computed tomography (diceCT): an emerging tool for rapid, high‐resolution, 3‐D imaging of metazoan soft tissues

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Morphologists have historically had to rely on destructive procedures to visualize the three‐dimensional (3‐D) anatomy of animals. More recently, however, non‐destructive techniques have come to the forefront. These include X‐ray computed tomography ( CT), which has been used most commonly to examine the mineralized, hard‐tissue anatomy of living and fossil metazoans. One relatively new and potentially transformative aspect of current CT‐based research is the use of chemical agents to render visible, and differentiate between, soft‐tissue structures in X‐ray images. Specifically, iodine has emerged as one of the most widely used of these contrast agents among animal morphologists due to its ease of handling, cost effectiveness, and differential affinities for major types of soft tissues. The rapid adoption of iodine‐based contrast agents has resulted in a proliferation of distinct specimen preparations and scanning parameter choices, as well as an increasing variety of imaging hardware and software preferences. Here we provide a critical review of the recent contributions to iodine‐based, contrast‐enhanced CT research to enable researchers just beginning to employ contrast enhancement to make sense of this complex new landscape of methodologies. We provide a detailed summary of recent case studies, assess factors that govern success at each step of the specimen storage, preparation, and imaging processes, and make recommendations for standardizing both techniques and reporting practices. Finally, we discuss potential cutting‐edge applications of diffusible iodine‐based contrast‐enhanced computed tomography (dice CT) and the issues that must still be overcome to facilitate the broader adoption of dice CT going forward.

          Related collections

          Most cited references61

          • Record: found
          • Abstract: found
          • Article: not found

          Concentration-dependent specimen shrinkage in iodine-enhanced microCT.

          Iodine potassium iodide (I2 KI) solution can be employed as a contrast agent for the visualisation of soft tissue structures in micro-computed tomography studies. This technique provides high resolution images of soft tissue non-destructively but initial studies suggest that the stain can cause substantial specimen shrinkage. The degree of specimen shrinkage, and potential deformation, is an important consideration when using the data for morphological studies. Here we quantify the macroscopic volume changes in mouse skeletal muscle, cardiac muscle and cerebellum as a result of immersion in the common fixatives 10% phosphate-buffered formal saline, 70% ethanol and 3% glutaraldehyde, compared with I2 KI staining solution at concentrations of 2, 6, 10 and 20%. Immersion in the I2 KI solution resulted in dramatic changes of tissue volume, which were far larger than the shrinkage from formalin fixation alone. The degree of macroscopic change was most dependent upon the I2 KI concentration, with severe shrinkage of 70% seen in solutions of 20% I2 KI after 14 days' incubation. When using this technique care needs to be taken to use the lowest concentration that will give adequate contrast to minimise artefacts due to shrinkage. © 2013 Anatomical Society.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: found
            Is Open Access

            The songbird syrinx morphome: a three-dimensional, high-resolution, interactive morphological map of the zebra finch vocal organ

            Background Like human infants, songbirds learn their species-specific vocalizations through imitation learning. The birdsong system has emerged as a widely used experimental animal model for understanding the underlying neural mechanisms responsible for vocal production learning. However, how neural impulses are translated into the precise motor behavior of the complex vocal organ (syrinx) to create song is poorly understood. First and foremost, we lack a detailed understanding of syringeal morphology. Results To fill this gap we combined non-invasive (high-field magnetic resonance imaging and micro-computed tomography) and invasive techniques (histology and micro-dissection) to construct the annotated high-resolution three-dimensional dataset, or morphome, of the zebra finch (Taeniopygia guttata) syrinx. We identified and annotated syringeal cartilage, bone and musculature in situ in unprecedented detail. We provide interactive three-dimensional models that greatly improve the communication of complex morphological data and our understanding of syringeal function in general. Conclusions Our results show that the syringeal skeleton is optimized for low weight driven by physiological constraints on song production. The present refinement of muscle organization and identity elucidates how apposed muscles actuate different syringeal elements. Our dataset allows for more precise predictions about muscle co-activation and synergies and has important implications for muscle activity and stimulation experiments. We also demonstrate how the syrinx can be stabilized during song to reduce mechanical noise and, as such, enhance repetitive execution of stereotypic motor patterns. In addition, we identify a cartilaginous structure suited to play a crucial role in the uncoupling of sound frequency and amplitude control, which permits a novel explanation of the evolutionary success of songbirds.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              An exploratory study of contrast agents for soft tissue visualization by means of high resolution X-ray computed tomography imaging.

              High resolution X-ray computed tomography (CT), or microCT, is a promising and already widely used technique in various scientific fields. Also for histological purposes it has great potential. Although microCT has proven to be a valuable technique for the imaging of bone structures, the visualization of soft tissue structures is still an important challenge due to their low inherent X-ray contrast. One way to achieve contrast enhancement is to make use of contrast agents. However, contrary to light and electron microscopy, knowledge about contrast agents and staining procedures is limited for X-ray CT. The purpose of this paper is to identify useful X-ray contrast agents for soft tissue visualization, which can be applied in a simple way and are also suited for samples larger than (1 cm)(3) . And 28 chemical substances have been investigated. All chemicals were applied in the form of concentrated aqueous solutions in which the samples were immersed. First, strips of green Bacon were stained to evaluate contrast enhancement between muscle and adipose tissue. Furthermore it was also tested whether the contrast agents remained fixed in the tissue after staining by re-immersing them in water. Based on the results, 12 contrast agents were selected for further testing on postmortem mice hind legs, containing a variety of different tissues, including muscle, fat, bone, cartilage and tendons. It was evaluated whether the contrast agents allowed a clearer distinction between the different soft tissue structures present. Finally also penetration depth was measured. And 26 chemicals resulted in contrast enhancement between muscle and adipose tissue in the Bacon strips. Mercury(II)chloride (HgCl2 ), phosphotungstic acid (PTA), phosphomolybdic acid (PMA) and ammonium orthomolybdate ((NH4 )2 MoO4 ) remained fixed after re-immersion in water. The penetration tests showed that potassium iodide (KI) and sodium tungstate can be most efficiently used for large samples of the order of several tens of cm(3) . PMA, PTA, HgCl2 and also to a lesser extent Na2 WO4 and (NH4 )2 MoO4 allowed a clearer distinction between the different soft tissue structures present. © 2013 The Authors Journal of Microscopy © 2013 Royal Microscopical Society.
                Bookmark

                Author and article information

                Journal
                J Anat
                J. Anat
                10.1111/(ISSN)1469-7580
                JOA
                Journal of Anatomy
                John Wiley and Sons Inc. (Hoboken )
                0021-8782
                1469-7580
                11 March 2016
                June 2016
                11 March 2016
                : 228
                : 6 ( doiID: 10.1111/joa.2016.228.issue-6 )
                : 889-909
                Affiliations
                [ 1 ] Department of Anatomy and Cell BiologyOklahoma State University Center for Health Sciences Tulsa OKUSA
                [ 2 ] Department of Anatomical SciencesStony Brook University Stony Brook NYUSA
                [ 3 ] Department of Geological Sciences Jackson School of GeosciencesThe University of Texas at Austin Austin TXUSA
                [ 4 ] Department of Biological SciencesOhio University Athens OHUSA
                [ 5 ] Department of Pathology and Anatomical SciencesUniversity of Missouri Columbia MOUSA
                [ 6 ] Department of ArchaeologyUniversity of York and Hull York Medical School YorkUK
                [ 7 ] Department of Biological SciencesSam Houston State University Huntsville TXUSA
                [ 8 ]The Medical Center for Birds Oakley CAUSA
                [ 9 ] Department of Medical BiophysicsUniversity of Toronto Toronto ONCanada
                [ 10 ] Department of Theoretical BiologyUniversity of Vienna ViennaAustria
                [ 11 ] Museum für NaturkundeLeibniz‐Institut für Evolutions‐ und Biodiversitätforschung an der Humboldt‐Universität zu Berlin BerlinGermany
                [ 12 ] Department of Biomedical EngineeringThe University of Utah Salt Lake City UTUSA
                [ 13 ] Department of Organismal Biology and AnatomyThe University of Chicago Chicago ILUSA
                [ 14 ] Department of BiologyVillanova University Villanova PAUSA
                [ 15 ] Department of Ecology and Evolutionary BiologyBrown University Providence RIUSA
                [ 16 ] Department of Biomedical SciencesOhio University Athens OHUSA
                Author notes
                [*] [* ] Correspondence

                Paul M. Gignac, Department of Anatomy and Cell Biology, Oklahoma State University Center for Health Sciences, Tulsa, OK 74107, USA. T: + 1 918 5618265; E: paul.gignac@ 123456okstate.edu

                Author information
                http://orcid.org/0000-0001-5176-7154
                Article
                JOA12449
                10.1111/joa.12449
                5341577
                26970556
                cd18759c-dcf7-4f37-91f5-43408943654d
                © 2016 The Authors. Journal of Anatomy published by John Wiley & Sons Ltd on behalf of Anatomical Society

                This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 05 January 2016
                Page count
                Pages: 21
                Funding
                Funded by: The University of Texas (UT) at Austin
                Funded by: Jackson School of Geosciences
                Funded by: UTCT Laboratory
                Funded by: National Science Foundation
                Award ID: NSF IOS‐0749750
                Award ID: NSF EAGER 1450842
                Award ID: NSF DEB‐1457180
                Award ID: NSF EAGER 1450850
                Funded by: Stony Brook University Department of Anatomical Sciences
                Funded by: Oklahoma State University Center for Health Sciences Department of Anatomy and Cell Biology
                Categories
                Review Article
                Review Articles
                Custom metadata
                2.0
                joa12449
                June 2016
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.0.8 mode:remove_FC converted:07.03.2017

                Anatomy & Physiology
                alcoholic iodine,destaining,lugol's iodine,radiographic contrast agents,three‐dimensional imaging,x‐ray micro‐ct scanning

                Comments

                Comment on this article