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      DNA Barcoding of Andaliman ( Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene

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          Abstract

          Andaliman ( Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K ( matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium.

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          MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

          We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
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            Universal primers for amplification of three non-coding regions of chloroplast DNA.

            Six primers for the amplification of three non-coding regions of chloroplast DNA via the polymerase chain reaction (PCR) have been designed. In order to find out whether these primers were universal, we used them in an attempt to amplify DNA from various plant species. The primers worked for most species tested including algae, bryophytes, pteridophytes, gymnosperms and angiosperms. The fact that they amplify chloroplast DNA non-coding regions over a wide taxonomic range means that these primers may be used to study the population biology (in supplying markers) and evolution (inter- and probably intraspecific phylogenies) of plants.
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              BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT

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                Author and article information

                Journal
                Trop Life Sci Res
                Trop Life Sci Res
                Tropical Life Sciences Research
                Tropical Life Sciences Research
                Penerbit Universiti Sains Malaysia
                1985-3718
                2180-4249
                June 2021
                29 June 2021
                : 32
                : 2
                : 15-28
                Affiliations
                [1 ]Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Medan, Jl. Willem Iskandar, Pasar V, Medan Estate, Medan, 20221, North Sumatra, Indonesia
                [2 ]Department of Biology, Faculty of Sciences and Technology, Islamic University of Assyafiiyah, Jl. Jatiwaringin Raya, No 12, East Jakarta,17411 Indonesia
                [3 ]Department of Biology, Faculty of Sciences and Technology, Islamic State University Sunan Ampel Surabaya, Jl. Ahmad Yani 117 Surabaya, East Java, 60237, Indonesia
                Author notes
                [* ]Corresponding author: ekoprasetya.biologi@ 123456gmail.com
                Article
                tlsr-32-2-15
                10.21315/tlsr2021.32.2.2
                8300946
                34367512
                cd19e06b-3d6f-470c-96b6-203b9c371dbb
                © Penerbit Universiti Sains Malaysia, 2021

                This work is licensed under the terms of the Creative Commons Attribution (CC BY) ( http://creativecommons.org/licenses/by/4.0/).

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                z. acanthopodium,maturase k,north sumatra,dna barcoding
                z. acanthopodium, maturase k, north sumatra, dna barcoding

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