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      The Structure of the R2TP Complex Defines a Platform for Recruiting Diverse Client Proteins to the HSP90 Molecular Chaperone System

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          Summary

          The R2TP complex, comprising the Rvb1p-Rvb2p AAA-ATPases, Tah1p, and Pih1p in yeast, is a specialized Hsp90 co-chaperone required for the assembly and maturation of multi-subunit complexes. These include the small nucleolar ribonucleoproteins, RNA polymerase II, and complexes containing phosphatidylinositol-3-kinase-like kinases. The structure and stoichiometry of yeast R2TP and how it couples to Hsp90 are currently unknown. Here, we determine the 3D organization of yeast R2TP using sedimentation velocity analysis and cryo-electron microscopy. The 359-kDa complex comprises one Rvb1p/Rvb2p hetero-hexamer with domains II (DIIs) forming an open basket that accommodates a single copy of Tah1p-Pih1p. Tah1p-Pih1p binding to multiple DII domains regulates Rvb1p/Rvb2p ATPase activity. Using domain dissection and cross-linking mass spectrometry, we identified a unique region of Pih1p that is essential for interaction with Rvb1p/Rvb2p. These data provide a structural basis for understanding how R2TP couples an Hsp90 dimer to a diverse set of client proteins and complexes.

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          Highlights

          • Rvb1p-Rvb2p forms a hetero-hexamer with DII domains recruiting a single Tah1p-Pih1p

          • Residues 230–250 in Pih1p are essential to bind Rvb1p-Rvb2p

          • 3D structure of yeast R2TP couples an Hsp90 dimer to client proteins

          • Tah1p-Pih1p binding to flexible DII domains stimulates Rvb1p-Rvb2p ATPase activity

          Abstract

          Rivera-Calzada, Pal et al. reveal the 3D architecture of yeast R2TP using sedimentation velocity analysis, cryo-EM, XL/MS, and domain mapping, and find that the Rvb1p/Rvb2p ring binds a single Tah1p-Pih1p unit that modulates Rvb1/2-ATPase activity and couples phosphorylated clients and client adaptors to a single Hsp90 dimer.

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          Most cited references27

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          Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.

          In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this wide-reaching change is the continuous development of image processing software. Here we present Scipion, a software framework for integrating several 3DEM software packages through a workflow-based approach. Scipion allows the execution of reusable, standardized, traceable and reproducible image-processing protocols. These protocols incorporate tools from different programs while providing full interoperability among them. Scipion is an open-source project that can be downloaded from http://scipion.cnb.csic.es.
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            xiNET: Cross-link Network Maps With Residue Resolution*

            xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. Availability: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally.
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              HSP90 and its R2TP/Prefoldin-like cochaperone are involved in the cytoplasmic assembly of RNA polymerase II.

              RNA polymerases are key multisubunit cellular enzymes. Microscopy studies indicated that RNA polymerase I assembles near its promoter. However, the mechanism by which RNA polymerase II is assembled from its 12 subunits remains unclear. We show here that RNA polymerase II subunits Rpb1 and Rpb3 accumulate in the cytoplasm when assembly is prevented and that nuclear import of Rpb1 requires the presence of all subunits. Using MS-based quantitative proteomics, we characterized assembly intermediates. These included a cytoplasmic complex containing subunits Rpb1 and Rpb8 associated with the HSP90 cochaperone hSpagh (RPAP3) and the R2TP/Prefoldin-like complex. Remarkably, HSP90 activity stabilized incompletely assembled Rpb1 in the cytoplasm. Our data indicate that RNA polymerase II is built in the cytoplasm and reveal quality-control mechanisms that link HSP90 to the nuclear import of fully assembled enzymes. hSpagh also bound the free RPA194 subunit of RNA polymerase I, suggesting a general role in assembling RNA polymerases. Copyright © 2010 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                Journal
                Structure
                Structure
                Structure(London, England:1993)
                Cell Press
                0969-2126
                1878-4186
                05 July 2017
                05 July 2017
                : 25
                : 7
                : 1145-1152.e4
                Affiliations
                [1 ]Centro de Investigaciones Biológicas (CIB), Spanish National Research Council (CSIC), Ramiro de Maeztu 9, 28040 Madrid, Spain
                [2 ]Genome Damage and Stability Centre, School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9RQ, UK
                [3 ]Structural Biology Unit, CIC bioGUNE, Bizkaia Technology Park, 48160 Derio, Spain
                [4 ]MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
                [5 ]Structural Biology Programme, Spanish National Cancer Research Centre (CNIO), Melchor Fernández Almagro 3, 28029 Madrid, Spain
                Author notes
                []Corresponding author chris.prodromou@ 123456sussex.ac.uk
                [∗∗ ]Corresponding author laurence.pearl@ 123456sussex.ac.uk
                [∗∗∗ ]Corresponding author ollorca@ 123456cnio.es
                [6]

                These authors contributed equally

                [7]

                Lead Contact

                Article
                S0969-2126(17)30150-8
                10.1016/j.str.2017.05.016
                5501727
                28648606
                ce7410ea-a980-4257-a0db-7c9c476eb137
                © 2017 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 20 February 2017
                : 20 April 2017
                : 22 May 2017
                Categories
                Short Article

                Molecular biology
                hsp90 co-chaperone,pih1,r2tp complex,tah1,rvb1,rvb2,tel2-tti1-tti2,cryo-electron microscopy (cryo-em)

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