Unipept web services for metaproteomics analysis.

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Abstract

Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of all UniProt entries in which a given tryptic peptide occurs. Unipept version 2.4 introduced web services that provide programmatic access to the metaproteomics analysis features. This enables integration of Unipept functionality in custom applications and data processing pipelines.

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Journal

Journal ID (iso-abbrev): Bioinformatics

Title: Bioinformatics (Oxford, England)

Publisher: Oxford University Press (OUP)

ISSN (Electronic): 1367-4811

ISSN (Print): 1367-4803

Publication date (Electronic): Jun 01 2016

Volume: 32

Issue: 11

Affiliations

[1 ] Department of Applied Mathematics, Computer Science and Statistics.

[2 ] Laboratory for Protein Biochemistry and Biomolecular Engineering, Faculty of Sciences and.

[3 ] Laboratory for Microbiology Faculty of Sciences, Ghent University, B-9000, Ghent, Belgium.

Article

Publisher Item ID: btw039

DOI: 10.1093/bioinformatics/btw039

PubMed ID: 26819472

SO-VID: cf230728-7915-4684-9966-af763b5d8f75

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