0
views
0
recommends
+1 Recommend
1 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Using metabarcoding and « Diat.Barcode » database to perfom molecular identification on marine biofilms

      , , ,

      ARPHA Conference Abstracts

      Pensoft Publishers

      Read this article at

      ScienceOpenPublisher
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Marine benthic diatoms highly contribute to biofilms formation, playing a crucial role on both living and artificial surfaces ‘colonization (Briand 2017, Salta 2013). However, their microscopic morphological identification is time consuming and requires a high expertise in taxonomy. We therefore decided to look toward molecular analyses and especially metabarcoding. In this study, we determine : (i) if the use of the “Diat.barcode” database, mostly developed for freshwater diatoms (Rimet 2019), is relevant to characterize marine biofilm communities, (ii) if the amplification of degenerated primers targeting the rbcL gene (Vasselon et al. 2017) could improve the diversity of marine diatom biofilms, and (iii) if molecular and morphological analyses could be correlated.A large majority of OTUs (>95%) was affiliated using the “Diat.barcode” database and the pipeline FROGS, with coverage and affinity values above 80%. OTUs tables contained 75% of diatom species already reported from marine environment, with 82% belonging to the pennates group. The use of degenerated primers significantly improved richness and diversity. Moreover, it allowed us to identify taxa that were not present before, as Iconella, Sellaphora and Coronia. Finally, we showed higher richness and diversity, but also a higher repeatability (replicates closeness) leading to a better clustering with metabarcoding. We found differences in terms of biomarkers, but more broadly, we were able to correlate significantly (r = 0,404; p<0.0001) diatom assemblages.While the latest version of “Diat.barcode” database contains only 12.4% species referenced as marine, it appears to be a powerful tool, even on biofilm samples from the Mediterranean, Baltic seas and Indian Ocean. Furthermore, we confirmed the relevance of degenerated primers to amplify a higher diversity of diatoms. Finally, beta-diversity similarity using molecular and microscopic analysis appeared positive, leading to the conclusion that the two methods should be used in a complementary way.

          Related collections

          Author and article information

          Contributors
          (View ORCID Profile)
          Journal
          ARPHA Conference Abstracts
          ACA
          Pensoft Publishers
          2603-3925
          March 04 2021
          March 04 2021
          : 4
          Article
          10.3897/aca.4.e65046
          © 2021

          Comments

          Comment on this article