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      Promotion of virus assembly and organization by the measles virus matrix protein

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          Abstract

          Measles virus (MeV) remains a major human pathogen, but there are presently no licensed antivirals to treat MeV or other paramyxoviruses. Here, we use cryo-electron tomography (cryo-ET) to elucidate the principles governing paramyxovirus assembly in MeV-infected human cells. The three-dimensional (3D) arrangement of the MeV structural proteins including the surface glycoproteins (F and H), matrix protein (M), and the ribonucleoprotein complex (RNP) are characterized at stages of virus assembly and budding, and in released virus particles. The M protein is observed as an organized two-dimensional (2D) paracrystalline array associated with the membrane. A two-layered F–M lattice is revealed suggesting that interactions between F and M may coordinate processes essential for MeV assembly. The RNP complex remains associated with and in close proximity to the M lattice. In this model, the M lattice facilitates the well-ordered incorporation and concentration of the surface glycoproteins and the RNP at sites of virus assembly.

          Abstract

          Virus assembly is technically challenging to study. Here the authors use cryo-electron tomography of measles virus-infected human cells to determine native-state virus structure and they locate well-ordered M lattices that organize viral glycoproteins, RNP, and drive assembly.

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          Structure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation

          Enveloped viruses have evolved complex glycoprotein machinery that drives the fusion of viral and cellular membranes, permitting entry of the viral genome into the cell. For the paramyxoviruses, the fusion (F) protein catalyses this membrane merger and entry step, and it has been postulated that the F protein undergoes complex refolding during this process. Here we report the crystal structure of the parainfluenza virus 5 F protein in its prefusion conformation, stabilized by the addition of a carboxy-terminal trimerization domain. The structure of the F protein shows that there are profound conformational differences between the pre- and postfusion states, involving transformations in secondary and tertiary structure. The positions and structural transitions of key parts of the fusion machinery, including the hydrophobic fusion peptide and two helical heptad repeat regions, clarify the mechanism of membrane fusion mediated by the F protein. Supplementary information The online version of this article (doi:10.1038/nature04322) contains supplementary material, which is available to authorized users.
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            THE METHOD OF ‘RIGHT AND WRONG CASES’ (‘CONSTANT STIMULI’) WITHOUT GAUSS'S FORMULAE

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              Clustering and variance maps for cryo-electron tomography using wedge-masked differences.

              Cryo-electron tomography provides 3D imaging of frozen hydrated biological samples with nanometer resolution. Reconstructed volumes suffer from low signal-to-noise-ratio (SNR)(1) and artifacts caused by systematically missing tomographic data. Both problems can be overcome by combining multiple subvolumes with varying orientations, assuming they contain identical structures. Clustering (unsupervised classification) is required to ensure or verify population homogeneity, but this process is complicated by the problems of poor SNR and missing data, the factors that led to consideration of multiple subvolumes in the first place. Here, we describe a new approach to clustering and variance mapping in the face of these difficulties. The combined subvolume is taken as an estimate of the true subvolume, and the effect of missing data is computed for individual subvolumes. Clustering and variance mapping then proceed based on differences between expected and observed subvolumes. We show that this new method is faster and more accurate than two current, widely used techniques. Copyright © 2011 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                rplemper@gsu.edu
                erwrigh@emory.edu
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                30 April 2018
                30 April 2018
                2018
                : 9
                : 1736
                Affiliations
                [1 ]ISNI 0000 0004 0371 6071, GRID grid.428158.2, Division of Infectious Diseases, Department of Pediatrics, Emory University School of Medicine, , Children’s Healthcare of Atlanta, ; Atlanta, GA 30322 USA
                [2 ]ISNI 0000 0001 2097 4943, GRID grid.213917.f, School of Biological Sciences, , Georgia Institute of Technology, ; Atlanta, GA 30332 USA
                [3 ]ISNI 0000 0004 1936 738X, GRID grid.213876.9, Department of Infectious Diseases, Department of Population Health and Center for Vaccines and Immunology, , University of Georgia, ; Athens, GA 30602 USA
                [4 ]ISNI 0000 0004 1936 7400, GRID grid.256304.6, Institute for Biomedical Sciences, , Georgia State University, ; Atlanta, GA 30303 USA
                [5 ]ISNI 0000 0001 0941 6502, GRID grid.189967.8, Robert P. Apkarian Integrated Electron Microscopy Core, Emory University, ; Atlanta, GA 30322 USA
                Author information
                http://orcid.org/0000-0002-8408-850X
                Article
                4058
                10.1038/s41467-018-04058-2
                5928126
                29712906
                d025eff4-c669-47b1-b009-c60aeabcd549
                © The Author(s) 2018

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 10 July 2017
                : 29 March 2018
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