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      Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.

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          Abstract

          The hemoprotein myoglobin is a model system for the study of protein dynamics. We used time-resolved serial femtosecond crystallography at an x-ray free-electron laser to resolve the ultrafast structural changes in the carbonmonoxy myoglobin complex upon photolysis of the Fe-CO bond. Structural changes appear throughout the protein within 500 femtoseconds, with the C, F, and H helices moving away from the heme cofactor and the E and A helices moving toward it. These collective movements are predicted by hybrid quantum mechanics/molecular mechanics simulations. Together with the observed oscillations of residues contacting the heme, our calculations support the prediction that an immediate collective response of the protein occurs upon ligand dissociation, as a result of heme vibrational modes coupling to global modes of the protein.

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          Ab initio effective core potentials for molecular calculations. Potentials for the transition metal atoms Sc to Hg

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            Nosé–Hoover chains: The canonical ensemble via continuous dynamics

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              Nonlinear ionic pseudopotentials in spin-density-functional calculations

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                Author and article information

                Journal
                Science
                Science (New York, N.Y.)
                1095-9203
                0036-8075
                Oct 23 2015
                : 350
                : 6259
                Affiliations
                [1 ] Max-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120 Heidelberg, Germany. thomas.barends@mpimf-heidelberg.mpg.de ilme.schlichting@mpimf-heidelberg.mpg.de.
                [2 ] Max-Planck-Institut für Medizinische Forschung, Jahnstraße 29, 69120 Heidelberg, Germany.
                [3 ] Max-Planck-Institut für Biophysik, Max-von-Laue-Straße 3, 60438 Frankfurt am Main, Germany.
                [4 ] European XFEL GmbH, Albert-Einstein-Ring 19, 22761 Hamburg, Germany.
                [5 ] Institut für Physikalische und Theoretische Chemie, Goethe-Universität, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany.
                [6 ] Max-Planck-Institut für Biophysik, Max-von-Laue-Straße 3, 60438 Frankfurt am Main, Germany. Institut für Physikalische und Theoretische Chemie, Goethe-Universität, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany.
                [7 ] Linac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA.
                Article
                science.aac5492
                10.1126/science.aac5492
                26359336
                d219d28d-0586-4821-af35-3f3b96171522
                Copyright © 2015, American Association for the Advancement of Science.
                History

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