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      Estimation and extrapolation of time trends in registry data---Borrowing strength from related populations

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          Abstract

          To analyze and project age-specific mortality or morbidity rates age-period-cohort (APC) models are very popular. Bayesian approaches facilitate estimation and improve predictions by assigning smoothing priors to age, period and cohort effects. Adjustments for overdispersion are straightforward using additional random effects. When rates are further stratified, for example, by countries, multivariate APC models can be used, where differences of stratum-specific effects are interpretable as log relative risks. Here, we incorporate correlated stratum-specific smoothing priors and correlated overdispersion parameters into the multivariate APC model, and use Markov chain Monte Carlo and integrated nested Laplace approximations for inference. Compared to a model without correlation, the new approach may lead to more precise relative risk estimates, as shown in an application to chronic obstructive pulmonary disease mortality in three regions of England and Wales. Furthermore, the imputation of missing data for one particular stratum may be improved, since the new approach takes advantage of the remaining strata if the corresponding observations are available there. This is shown in an application to female mortality in Denmark, Sweden and Norway from the 20th century, where we treat for each country in turn either the first or second half of the observations as missing and then impute the omitted data. The projections are compared to those obtained from a univariate APC model and an extended Lee--Carter demographic forecasting approach using the proper Dawid--Sebastiani scoring rule.

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          Predictive model assessment for count data.

          We discuss tools for the evaluation of probabilistic forecasts and the critique of statistical models for count data. Our proposals include a nonrandomized version of the probability integral transform, marginal calibration diagrams, and proper scoring rules, such as the predictive deviance. In case studies, we critique count regression models for patent data, and assess the predictive performance of Bayesian age-period-cohort models for larynx cancer counts in Germany. The toolbox applies in Bayesian or classical and parametric or nonparametric settings and to any type of ordered discrete outcomes.
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            Epidemiologic characterization of the 1918 influenza pandemic summer wave in Copenhagen: implications for pandemic control strategies.

            The 1918-1919 A/H1N1 influenza pandemic killed approximately 50 million people worldwide. Historical records suggest that an early pandemic wave struck Europe during the summer of 1918. We obtained surveillance data that were compiled weekly, during 1910-1919, in Copenhagen, Denmark; the records included medically treated influenza-like illnesses (ILIs), hospitalizations, and deaths by age. We used a Serfling seasonal regression model to quantify excess morbidity and mortality, and we estimated the reproductive number (R) for the summer, fall, and winter pandemic waves. A large epidemic occurred in Copenhagen during the summer of 1918; the age distribution of deaths was characteristic of the 1918-1919 A/H1N1 pandemic overall. That summer wave accounted for 29%-34% of all excess ILIs and hospitalizations during 1918, whereas the case-fatality rate (0.3%) was many-fold lower than that of the fall wave (2.3%). Similar patterns were observed in 3 other Scandinavian cities. R was substantially higher in summer (2.0-5.4) than in fall (1.2-1.6) in all cities. The Copenhagen summer wave may have been caused by a precursor A/H1N1 pandemic virus that transmitted efficiently but lacked extreme virulence. The R measured in the summer wave is likely a better approximation of transmissibility in a fully susceptible population and is substantially higher than that found in previous US studies. The summer wave may have provided partial protection against the lethal fall wave.
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              Proper multivariate conditional autoregressive models for spatial data analysis.

              In the past decade conditional autoregressive modelling specifications have found considerable application for the analysis of spatial data. Nearly all of this work is done in the univariate case and employs an improper specification. Our contribution here is to move to multivariate conditional autoregressive models and to provide rich, flexible classes which yield proper distributions. Our approach is to introduce spatial autoregression parameters. We first clarify what classes can be developed from the family of Mardia (1988) and contrast with recent work of Kim et al. (2000). We then present a novel parametric linear transformation which provides an extension with attractive interpretation. We propose to employ these models as specifications for second-stage spatial effects in hierarchical models. Two applications are discussed; one for the two-dimensional case modelling spatial patterns of child growth, the other for a four-dimensional situation modelling spatial variation in HLA-B allele frequencies. In each case, full Bayesian inference is carried out using Markov chain Monte Carlo simulation.
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                Author and article information

                Journal
                02 August 2011
                2012-03-20
                Article
                10.1214/11-AOAS498
                1108.0606
                d3becd5a-a276-4678-acb9-83e29ac14cb1

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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                IMS-AOAS-AOAS498
                Annals of Applied Statistics 2012, Vol. 6, No. 1, 304-333
                Published in at http://dx.doi.org/10.1214/11-AOAS498 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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