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      If Dung Beetles (Scarabaeidae: Scarabaeinae) Arose in Association with Dinosaurs, Did They Also Suffer a Mass Co-Extinction at the K-Pg Boundary?

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          Abstract

          The evolutionary success of beetles and numerous other terrestrial insects is generally attributed to co-radiation with flowering plants but most studies have focused on herbivorous or pollinating insects. Non-herbivores represent a significant proportion of beetle diversity yet potential factors that influence their diversification have been largely unexamined. In the present study, we examine the factors driving diversification within the Scarabaeidae, a speciose beetle family with a range of both herbivorous and non-herbivorous ecologies. In particular, it has been long debated whether the key event in the evolution of dung beetles (Scarabaeidae: Scarabaeinae) was an adaptation to feeding on dinosaur or mammalian dung. Here we present molecular evidence to show that the origin of dung beetles occurred in the middle of the Cretaceous, likely in association with dinosaur dung, but more surprisingly the timing is consistent with the rise of the angiosperms. We hypothesize that the switch in dinosaur diet to incorporate more nutritious and less fibrous angiosperm foliage provided a palatable dung source that ultimately created a new niche for diversification. Given the well-accepted mass extinction of non-avian dinosaurs at the Cretaceous-Paleogene boundary, we examine a potential co-extinction of dung beetles due to the loss of an important evolutionary resource, i.e., dinosaur dung. The biogeography of dung beetles is also examined to explore the previously proposed “out of Africa” hypothesis. Given the inferred age of Scarabaeinae as originating in the Lower Cretaceous, the major radiation of dung feeders prior to the Cenomanian, and the early divergence of both African and Gondwanan lineages, we hypothesise that that faunal exchange between Africa and Gondwanaland occurred during the earliest evolution of the Scarabaeinae. Therefore we propose that both Gondwanan vicariance and dispersal of African lineages is responsible for present day distribution of scarabaeine dung beetles and provide examples.

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          MRBAYES: Bayesian inference of phylogenetic trees.

          The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. MRBAYES, including the source code, documentation, sample data files, and an executable, is available at http://brahms.biology.rochester.edu/software.html.
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            The placental mammal ancestor and the post-K-Pg radiation of placentals.

            To discover interordinal relationships of living and fossil placental mammals and the time of origin of placentals relative to the Cretaceous-Paleogene (K-Pg) boundary, we scored 4541 phenomic characters de novo for 86 fossil and living species. Combining these data with molecular sequences, we obtained a phylogenetic tree that, when calibrated with fossils, shows that crown clade Placentalia and placental orders originated after the K-Pg boundary. Many nodes discovered using molecular data are upheld, but phenomic signals overturn molecular signals to show Sundatheria (Dermoptera + Scandentia) as the sister taxon of Primates, a close link between Proboscidea (elephants) and Sirenia (sea cows), and the monophyly of echolocating Chiroptera (bats). Our tree suggests that Placentalia first split into Xenarthra and Epitheria; extinct New World species are the oldest members of Afrotheria.
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              Estimating the rate of evolution of the rate of molecular evolution.

              A simple model for the evolution of the rate of molecular evolution is presented. With a Bayesian approach, this model can serve as the basis for estimating dates of important evolutionary events even in the absence of the assumption of constant rates among evolutionary lineages. The method can be used in conjunction with any of the widely used models for nucleotide substitution or amino acid replacement. It is illustrated by analyzing a data set of rbcL protein sequences.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                4 May 2016
                2016
                : 11
                : 5
                : e0153570
                Affiliations
                [1 ]Department of Zoology, Faculty of Science, Palacky University, Olomouc, Czech Republic
                [2 ]Australian National Insect Collection, National Research Collections Australia, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, Australia
                [3 ]Earth, Environmental and Biological Sciences School, Science and Engineering Faculty, Queensland University of Technology, Brisbane, QLD, Australia
                Onderstepoort Veterinary Institute, SOUTH AFRICA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Conceived and designed the experiments: NLG SLC. Performed the experiments: NLG. Analyzed the data: NLG. Contributed reagents/materials/analysis tools: TAW AS LB. Wrote the paper: NLG SLC. Identification of specimens: TAW.

                [¤]

                Current address: Department of Invertebrate Zoology, Cleveland Museum of Natural History, Cleveland, Ohio, United States of America

                Article
                PONE-D-15-54970
                10.1371/journal.pone.0153570
                4856399
                27145126
                d576d489-158c-40db-b97e-ee9aeba9ecf0
                © 2016 Gunter et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 21 December 2015
                : 31 March 2016
                Page count
                Figures: 5, Tables: 7, Pages: 47
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100004895, European Social Fund;
                Award ID: reg. c. CZ.1.07/2.3.00/30.0004
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100001138, Australian Biological Resources Study;
                Award ID: BBR-210-23
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100000923, Australian Research Council;
                Award ID: FT120100746
                Award Recipient :
                The study was supported by an OCE postdoctoral fellowship from CSIRO, www.csiro.au, and was co-financed by the European Social Fund and the state budget of the Czech Republic, (POST-UP a reg. c. CZ.1.07/2.3.00/30.0004), http://www.esfcr.eu/european-social-fund-in-the-czech-republic. NLG was supported by an Australian Biological Resource Study, Bush Blitz grant (BBR-210-23), http://www.bushblitz.org.au/. SLC was supported by an Australian Research Council Future Fellowship (FT120100746), http://www.arc.gov.au/future-fellowships. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Animals
                Invertebrates
                Arthropoda
                Insects
                Beetles
                Dung Beetles
                Biology and Life Sciences
                Paleontology
                Fossils
                Fossil Calibration
                Earth Sciences
                Paleontology
                Fossils
                Fossil Calibration
                Biology and Life Sciences
                Paleontology
                Fossils
                Earth Sciences
                Paleontology
                Fossils
                Biology and Life Sciences
                Organisms
                Plants
                Flowering Plants
                Earth Sciences
                Geology
                Geologic Time
                Mesozoic Era
                Cretaceous Period
                Biology and Life Sciences
                Paleontology
                Fossils
                Fossil Record
                Earth Sciences
                Paleontology
                Fossils
                Fossil Record
                Biology and Life Sciences
                Organisms
                Animals
                Prehistoric Animals
                Archosauria
                Dinosaurs
                Biology and Life Sciences
                Paleontology
                Prehistoric Animals
                Archosauria
                Dinosaurs
                Earth Sciences
                Paleontology
                Prehistoric Animals
                Archosauria
                Dinosaurs
                Biology and Life Sciences
                Paleontology
                Paleobiology
                Paleozoology
                Vertebrate Paleontology
                Prehistoric Animals
                Archosauria
                Dinosaurs
                Earth Sciences
                Paleontology
                Paleobiology
                Paleozoology
                Vertebrate Paleontology
                Prehistoric Animals
                Archosauria
                Dinosaurs
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Molecular Biology Assays and Analysis Techniques
                Phylogenetic Analysis
                Research and Analysis Methods
                Molecular Biology Techniques
                Molecular Biology Assays and Analysis Techniques
                Phylogenetic Analysis
                Custom metadata
                All relevant data are within the paper and its Supporting Information files. All sequence files are available from GenBank database (accession number(s) KF801683-KF802169).

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