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      MicroRNA circulating in the early aftermath of motor vehicle collision predict persistent pain development and suggest a role for microRNA in sex-specific pain differences

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          Abstract

          Background

          Molecular mediators influencing the transition from acute to persistent musculoskeletal pain following common stress exposures such as motor vehicle collision (MVC) remain poorly understood. In this exploratory, proof of concept study, we compared circulating microRNA (miRNA) expression profiles in the early aftermath of MVC among individuals who did and did not subsequently develop persistent pain. Blood RNA samples were obtained from African American individuals (n = 53) who presented to the emergency department after MVC and were discharged to home after evaluation. The presence or absence of severe pain in the axial region, the most common and morbid region in which post-MVC pain occurs, was assessed 6 weeks following MVC via standardized questionnaire. miRNA expression was determined using miRNA-sequencing; nonparametric analyses were used to compare miRNA expression levels among individuals with and without persistent pain.

          Results

          Thirty-two mature miRNA were differentially expressed (p < 0.05) in those with and without severe axial pain at 6 weeks. miR-135a-5p, a regulator of the serotonin receptor that is known to be stress-responsive, differed most significantly between groups (p = 3 × 10 −4). This miRNA, and miR-3613-3p (p = 0.001) survived correction for multiple testing (FDR = 0.15) in this small sample. Interestingly, differentially expressed miRNA were enriched for X chromosome location. In secondary analyses, the eight X chromosome miRNA were (a) more significantly associated with axial pain in women than men, (b) expressed more highly in the peripheral blood of women than men, and (c) predicted in pathway analyses (DIANA miRPath v 2.0) to regulate neuronal and neuroendocrine pathways previously implicated in various pain pathologies.

          Conclusions

          These results show that circulating miRNA predict persistent severe axial pain after MVC and suggest that they may be involved in the pathogenesis of post-traumatic musculoskeletal pain. However, further studies are needed to determine if these miRNA play a direct causal role.

          Electronic supplementary material

          The online version of this article (doi:10.1186/s12990-015-0069-3) contains supplementary material, which is available to authorized users.

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          Most cited references53

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            In silico prediction of protein-protein interactions in human macrophages

            Background: Protein-protein interaction (PPI) network analyses are highly valuable in deciphering and understanding the intricate organisation of cellular functions. Nevertheless, the majority of available protein-protein interaction networks are context-less, i.e. without any reference to the spatial, temporal or physiological conditions in which the interactions may occur. In this work, we are proposing a protocol to infer the most likely protein-protein interaction (PPI) network in human macrophages. Results: We integrated the PPI dataset from the Agile Protein Interaction DataAnalyzer (APID) with different meta-data to infer a contextualized macrophage-specific interactome using a combination of statistical methods. The obtained interactome is enriched in experimentally verified interactions and in proteins involved in macrophage-related biological processes (i.e. immune response activation, regulation of apoptosis). As a case study, we used the contextualized interactome to highlight the cellular processes induced upon Mycobacterium tuberculosis infection. Conclusion: Our work confirms that contextualizing interactomes improves the biological significance of bioinformatic analyses. More specifically, studying such inferred network rather than focusing at the gene expression level only, is informative on the processes involved in the host response. Indeed, important immune features such as apoptosis are solely highlighted when the spotlight is on the protein interaction level.
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              Prediction of mammalian microRNA targets.

              MicroRNAs (miRNAs) can play important gene regulatory roles in nematodes, insects, and plants by basepairing to mRNAs to specify posttranscriptional repression of these messages. However, the mRNAs regulated by vertebrate miRNAs are all unknown. Here we predict more than 400 regulatory target genes for the conserved vertebrate miRNAs by identifying mRNAs with conserved pairing to the 5' region of the miRNA and evaluating the number and quality of these complementary sites. Rigorous tests using shuffled miRNA controls supported a majority of these predictions, with the fraction of false positives estimated at 31% for targets identified in human, mouse, and rat and 22% for targets identified in pufferfish as well as mammals. Eleven predicted targets (out of 15 tested) were supported experimentally using a HeLa cell reporter system. The predicted regulatory targets of mammalian miRNAs were enriched for genes involved in transcriptional regulation but also encompassed an unexpectedly broad range of other functions.
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                Author and article information

                Contributors
                slinnstaedt@aims.unc.edu
                mags21walker@gmail.com
                parkerjs@email.unc.edu
                tingiu.yeh@gmail.com
                robertlanningsons@gmail.com
                ezimny1@hfhs.org
                CLEWAND1@hfhs.org
                phyllis.hendry@jax.ufl.edu
                damironk@einstein.edu
                cpearson@med.wayne.edu
                mvelilla@med.wayne.edu
                boneil@med.wayne.edu
                jeffrey.jones@spectrum-health.org
                raswor@beaumont.edu
                rdomeier@aol.com
                scott_hammond@med.unc.edu
                smclean@aims.unc.edu
                Journal
                Mol Pain
                Mol Pain
                Molecular Pain
                BioMed Central (London )
                1744-8069
                24 October 2015
                24 October 2015
                2015
                : 11
                : 66
                Affiliations
                [ ]TRYUMPH Research Program, Chapel Hill, NC USA
                [ ]Department of Anesthesiology, University of North Carolina, Medical School Wing C CB#7010, Chapel Hill, NC 27599-7010 USA
                [ ]Department of Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC USA
                [ ]Department of Cell Biology and Physiology, University of North Carolina, Chapel Hill, NC USA
                [ ]Department of Emergency Medicine, Henry Ford Hospital, Detroit, MI USA
                [ ]Department of Emergency Medicine, University of Florida College of Medicine-Jacksonville, Gainesville, FL USA
                [ ]Department of Emergency Medicine, Albert Einstein Medical Center, Philadelphia, PA USA
                [ ]Department of Emergency Medicine, Detroit Receiving, Detroit, MI USA
                [ ]Department of Emergency Medicine, Sinai Grace, Detroit, MI USA
                [ ]Department of Emergency Medicine, Wayne State University, Detroit, MI USA
                [ ]The Cardiovascular Research Institute, School of Medicine, Wayne State University, Detroit, MI USA
                [ ]Department of Emergency Medicine, Spectrum Health Butterworth Campus, Grand Rapids, MI USA
                [ ]Department of Emergency Medicine, William Beaumont Hospital, Troy, MI USA
                [ ]Department of Emergency Medicine, St Joseph Mercy Health System, Ypsilanti, MI USA
                [ ]Department of Emergency Medicine, University of North Carolina, Chapel Hill, NC USA
                Author information
                http://orcid.org/0000-0001-5295-7072
                Article
                69
                10.1186/s12990-015-0069-3
                4619556
                26498117
                d5b71ebf-6669-406f-b9d7-d10661d356aa
                © Linnstaedt et al. 2015

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 29 July 2015
                : 13 October 2015
                Categories
                Research
                Custom metadata
                © The Author(s) 2015

                Molecular medicine
                microrna,stress induced pain,persistent axial pain,motor vehicle collision,sexual dimorphism,african americans,musculoskeletal pain

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