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      ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples

      data-paper
      a , 1 , 1
      Scientific Data
      Nature Publishing Group
      Evolution, Palaeoceanography, Biooceanography

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          Abstract

          Census counts of marine microfossils in surface sediments represent an invaluable resource for paleoceanography and for the investigation of macroecological processes. A prerequisite for such applications is the provision of data syntheses for individual microfossil groups. Specific to such syntheses is the necessity of taxonomical harmonisation across the constituent datasets, coupled with dereplication of previous compilations. Both of these aspects require expert knowledge, but with increasing number of records involved in such syntheses, the application of expert knowledge via manual curation is not feasible. Here we present a synthesis of planktonic foraminifera census counts in surface sediment samples, which is taxonomically harmonised, dereplicated and treated for numerical and other inconsistencies. The data treatment is implemented as an objective and largely automated pipeline, allowing us to reduce the initial 6,984 records to 4,205 counts from unique sites and informative technical or true replicates. We provide the final product and document the procedure, which can be easily adopted for other microfossil data syntheses.

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          Most cited references43

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          The surface of the ice-age Earth.

          (1976)
          In the Northern Hemisphere the 18,000 B.P. world differed strikingly from the present in the huge land-based ice sheets, reaching approximately 3 km in thickness, and in a dramatic increase in the extent of pack ice and marine-based ice sheets. In the Southern Hemisphere the most striking contrast was the greater extent of sea ice. On land, grasslands, steppes, and deserts spread at the expense of forests. This change in vegetation, together with extensive areas of permanent ice and sandy outwash plains, caused an increase in global surface albedo over modern values. Sea level was lower by at least 85 m. The 18,000 B.P. oceans were characterized by: (i) marked steepening of thermal gradients along polar frontal systems, particularly in the North Atlantic and Antarctic; (ii) an equatorward displacement of polar frontal systems; (iii) general cooling of most surface waters, with a global average of -2.3 degrees C; (iv) increased cooling and up-welling along equatorial divergences in the Pacific and Atlantic; (v) low temperatures extending equatorward along the western coast of Africa, Australia, and South America, indicating increased upwelling and advection of cool waters; and (vi) nearly stable positions and temperatures of the central gyres in the subtropical Atlantic, Pacific, and Indian oceans.
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            Ocean plankton. Determinants of community structure in the global plankton interactome.

            Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.
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              SIMMAX: A modern analog technique to deduce Atlantic sea surface temperatures from planktonic foraminifera in deep-sea sediments

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                Author and article information

                Journal
                Sci Data
                Sci Data
                Scientific Data
                Nature Publishing Group
                2052-4463
                22 August 2017
                2017
                : 4
                : 170109
                Affiliations
                [1 ]MARUM Center for Marine Environmental Sciences, University of Bremen , Leobener Straße 8, Bremen 28359, Germany
                Author notes
                [a ] M.S. (email: msiccha@ 123456marum.de ).
                []

                M.S. conceived the study design and performed the sample processing procedures. M.K. initiated the study and contributed to the study design and manuscript. Both authors wrote the manuscript.

                Article
                sdata2017109
                10.1038/sdata.2017.109
                5566098
                28829434
                d64309cd-2c60-4461-beb1-e8b349a88ab5
                Copyright © 2017, The Author(s)

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.

                History
                : 31 March 2017
                : 20 June 2017
                Categories
                Data Descriptor

                evolution,palaeoceanography,biooceanography
                evolution, palaeoceanography, biooceanography

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