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      Prominent members of the human gut microbiota express endo-acting O-glycanases to initiate mucin breakdown

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          Abstract

          The thick mucus layer of the gut provides a barrier to infiltration of the underlying epithelia by both the normal microbiota and enteric pathogens. Some members of the microbiota utilise mucin glycoproteins as a nutrient source, but a detailed understanding of the mechanisms used to breakdown these complex macromolecules is lacking. Here we describe the discovery and characterisation of endo-acting enzymes from prominent mucin-degrading bacteria that target the polyLacNAc structures within oligosaccharide side chains of both animal and human mucins. These O-glycanases are part of the large and diverse glycoside hydrolase 16 (GH16) family and are often lipoproteins, indicating that they are surface located and thus likely involved in the initial step in mucin breakdown. These data provide a significant advance in our knowledge of the mechanism of mucin breakdown by the normal microbiota. Furthermore, we also demonstrate the potential use of these enzymes as tools to explore changes in O-glycan structure in a number of intestinal disease states.

          Abstract

          Epithelial cells that line the gut secrete complex glycoproteins that form a mucus layer to protect the gut wall from enteric pathogens. Here, the authors provide a comprehensive characterisation of endo-acting glycoside hydrolases expressed by mucin-degrading members of the microbiome that are able to cleave the O-glycan chains of a range of different animal and human mucins.

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          Most cited references36

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          SMART: recent updates, new developments and status in 2015

          SMART (Simple Modular Architecture Research Tool) is a web resource (http://smart.embl.de/) providing simple identification and extensive annotation of protein domains and the exploration of protein domain architectures. In the current version, SMART contains manually curated models for more than 1200 protein domains, with ∼200 new models since our last update article. The underlying protein databases were synchronized with UniProt, Ensembl and STRING, bringing the total number of annotated domains and other protein features above 100 million. SMART's ‘Genomic’ mode, which annotates proteins from completely sequenced genomes was greatly expanded and now includes 2031 species, compared to 1133 in the previous release. SMART analysis results pages have been completely redesigned and include links to several new information sources. A new, vector-based display engine has been developed for protein schematics in SMART, which can also be exported as high-resolution bitmap images for easy inclusion into other documents. Taxonomic tree displays in SMART have been significantly improved, and can be easily navigated using the integrated search engine.
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            Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont.

            The distal human gut is a microbial bioreactor that digests complex carbohydrates. The strategies evolved by gut microbes to sense and process diverse glycans have important implications for the assembly and operation of this ecosystem. The human gut-derived bacterium Bacteroides thetaiotaomicron forages on both host and dietary glycans. Its ability to target these substrates resides in 88 polysaccharide utilization loci (PULs), encompassing 18% of its genome. Whole genome transcriptional profiling and genetic tests were used to define the mechanisms underlying host glycan foraging in vivo and in vitro. PULs that target all major classes of host glycans were identified. However, mucin O-glycans are the principal host substrate foraged in vivo. Simultaneous deletion of five genes encoding ECF-sigma transcription factors, which activate mucin O-glycan utilization, produces defects in bacterial persistence in the gut and in mother-to-offspring transmission. Thus, PUL-mediated glycan catabolism is an important component in gut colonization and may impact microbiota ecology.
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              Immunological aspects of intestinal mucus and mucins.

              A number of mechanisms ensure that the intestine is protected from pathogens and also against our own intestinal microbiota. The outermost of these is the secreted mucus, which entraps bacteria and prevents their translocation into the tissue. Mucus contains many immunomodulatory molecules and is largely produced by the goblet cells. These cells are highly responsive to the signals they receive from the immune system and are also able to deliver antigens from the lumen to dendritic cells in the lamina propria. In this Review, we will give a basic overview of mucus, mucins and goblet cells, and explain how each of these contributes to immune regulation in the intestine.
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                Author and article information

                Contributors
                l.i.crouch@bham.ac.uk
                david.bolam@ncl.ac.uk
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                11 August 2020
                11 August 2020
                2020
                : 11
                : 4017
                Affiliations
                [1 ]GRID grid.1006.7, ISNI 0000 0001 0462 7212, Biosciences Institute, Faculty of Medical Sciences, , Newcastle University, ; Newcastle upon Tyne, UK
                [2 ]GRID grid.442238.b, ISNI 0000 0001 1882 0259, Universidade de Sorocaba, Programa de Processos Tecnológicos e Ambientais, ; Sorocaba, Brasil
                [3 ]GRID grid.417687.b, ISNI 0000 0001 0742 9289, Ludger Ltd, Culham Science Centre, ; Abingdon, UK
                [4 ]GRID grid.420004.2, ISNI 0000 0004 0444 2244, Department of Gastroenterology, , Newcastle upon Tyne Hospitals NHS Foundation Trust, ; Newcastle upon Tyne, UK
                [5 ]GRID grid.1006.7, ISNI 0000 0001 0462 7212, Translational and Clinical Research Institute, Faculty of Medical Sciences, , Newcastle University, ; Newcastle upon Tyne, UK
                [6 ]GRID grid.420004.2, ISNI 0000 0004 0444 2244, Department of Histopathology, , Newcastle upon Tyne Hospitals NHS Foundation Trust, ; Newcastle upon Tyne, UK
                [7 ]GRID grid.420004.2, ISNI 0000 0004 0444 2244, Department of Colorectal Surgery, , Newcastle upon Tyne Hospitals NHS Foundation Trust, ; Newcastle upon Tyne, UK
                [8 ]GRID grid.419334.8, ISNI 0000 0004 0641 3236, Newcastle Neonatal Service, , Royal Victoria Infirmary, ; Newcastle upon Tyne, UK
                [9 ]GRID grid.10419.3d, ISNI 0000000089452978, Centre for Proteomics and Metabolomics, , Leiden University Medical Centre, ; Leiden, Netherlands
                [10 ]GRID grid.214458.e, ISNI 0000000086837370, Department of Microbiology and Immunology, , University of Michigan Medical School, ; Ann Arbor, MI USA
                [11 ]GRID grid.33647.35, ISNI 0000 0001 2160 9198, Department of Chemistry and Chemical Biology, Centre for Biotechnology and Interdisciplinary Studies, , Rensselaer Polytechnic Institute, ; Troy, NY 12180 USA
                [12 ]GRID grid.6572.6, ISNI 0000 0004 1936 7486, Present Address: Institute of Microbiology and Infection, School of Biosciences, , University of Birmingham, ; Birmingham, B15 2TT UK
                Author information
                http://orcid.org/0000-0003-1479-3534
                http://orcid.org/0000-0003-4158-0462
                http://orcid.org/0000-0002-7271-4956
                http://orcid.org/0000-0002-9310-4110
                http://orcid.org/0000-0002-0814-4995
                http://orcid.org/0000-0001-6681-2990
                http://orcid.org/0000-0003-2219-5833
                http://orcid.org/0000-0003-0314-3122
                Article
                17847
                10.1038/s41467-020-17847-5
                7419316
                32782292
                d795412a-4ff2-4c97-be9d-645d91feddcf
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 January 2020
                : 21 July 2020
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                © The Author(s) 2020

                Uncategorized
                glycobiology,x-ray crystallography
                Uncategorized
                glycobiology, x-ray crystallography

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