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      Size conservation emerges spontaneously in biomolecular condensates formed by scaffolds and surfactant clients

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          Abstract

          Biomolecular condensates are liquid-like membraneless compartments that contribute to the spatiotemporal organization of proteins, RNA, and other biomolecules inside cells. Some membraneless compartments, such as nucleoli, are dispersed as different condensates that do not grow beyond a certain size, or do not present coalescence over time. In this work, using a minimal protein model, we show that phase separation of binary mixtures of scaffolds and low-valency clients that can act as surfactants—i.e., that significantly reduce the droplet surface tension—can yield either a single drop or multiple droplets that conserve their sizes on long timescales (herein ‘multidroplet size-conserved’ scenario’), depending on the scaffold to client ratio. Our simulations demonstrate that protein connectivity and condensate surface tension regulate the balance between these two scenarios. The multidroplet size-conserved scenario spontaneously arises at increasing surfactant-to-scaffold concentrations, when the interfacial penalty for creating small liquid droplets is sufficiently reduced by the surfactant proteins that are preferentially located at the interface. In contrast, low surfactant-to-scaffold concentrations enable continuous growth and fusion of droplets without restrictions. Overall, our work proposes one thermodynamic mechanism to help rationalize how size-conserved coexisting condensates can persist inside cells—shedding light on the roles of protein connectivity, binding affinity, and droplet composition in this process.

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          Fast Parallel Algorithms for Short-Range Molecular Dynamics

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            Double-slit photoelectron interference in strong-field ionization of the neon dimer

            Wave-particle duality is an inherent peculiarity of the quantum world. The double-slit experiment has been frequently used for understanding different aspects of this fundamental concept. The occurrence of interference rests on the lack of which-way information and on the absence of decoherence mechanisms, which could scramble the wave fronts. Here, we report on the observation of two-center interference in the molecular-frame photoelectron momentum distribution upon ionization of the neon dimer by a strong laser field. Postselection of ions, which are measured in coincidence with electrons, allows choosing the symmetry of the residual ion, leading to observation of both, gerade and ungerade, types of interference.
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              Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

              Krabbe disease (KD) is a neurodegenerative disorder caused by the lack of β- galactosylceramidase enzymatic activity and by widespread accumulation of the cytotoxic galactosyl-sphingosine in neuronal, myelinating and endothelial cells. Despite the wide use of Twitcher mice as experimental model for KD, the ultrastructure of this model is partial and mainly addressing peripheral nerves. More details are requested to elucidate the basis of the motor defects, which are the first to appear during KD onset. Here we use transmission electron microscopy (TEM) to focus on the alterations produced by KD in the lower motor system at postnatal day 15 (P15), a nearly asymptomatic stage, and in the juvenile P30 mouse. We find mild effects on motorneuron soma, severe ones on sciatic nerves and very severe effects on nerve terminals and neuromuscular junctions at P30, with peripheral damage being already detectable at P15. Finally, we find that the gastrocnemius muscle undergoes atrophy and structural changes that are independent of denervation at P15. Our data further characterize the ultrastructural analysis of the KD mouse model, and support recent theories of a dying-back mechanism for neuronal degeneration, which is independent of demyelination.
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                Author and article information

                Contributors
                jr752@cam.ac.uk
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                27 July 2021
                27 July 2021
                2021
                : 11
                : 15241
                Affiliations
                [1 ]GRID grid.5335.0, ISNI 0000000121885934, Maxwell Centre, Cavendish Laboratory, Department of Physics, , University of Cambridge, ; J J Thomson Avenue, Cambridge, CB3 0HE UK
                [2 ]GRID grid.5335.0, ISNI 0000000121885934, Yusuf Hamied Department of Chemistry, , University of Cambridge, ; Lensfield Road, Cambridge, CB2 1EW UK
                [3 ]GRID grid.5335.0, ISNI 0000000121885934, Department of Genetics, , University of Cambridge, ; Downing Site, Cambridge, CB2 3EH UK
                Article
                94309
                10.1038/s41598-021-94309-y
                8316449
                34315935
                d88ea91c-39ab-4dea-af82-3a709fd874e0
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 30 April 2021
                : 6 July 2021
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000266, Engineering and Physical Sciences Research Council;
                Award ID: EP/T517847/1
                Award Recipient :
                Funded by: Junior Research Fellow at Kings College
                Funded by: European Research Council
                Award ID: 803326
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100009978, Ernest Oppenheimer Memorial Trust;
                Categories
                Article
                Custom metadata
                © The Author(s) 2021

                Uncategorized
                biological physics,computational biophysics
                Uncategorized
                biological physics, computational biophysics

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