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      Long noncoding RNA ANRIL promotes the malignant progression of cholangiocarcinoma by epigenetically repressing ERRFI1 expression

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          Abstract

          Long noncoding RNAs (lncRNAs) have recently been verified to have significant regulatory functions in many types of human cancers. The lncRNA ANRIL is transcribed from the INK4b‐ARF‐INK4a gene cluster in the opposite direction. Whether ANRIL can act as an oncogenic molecule in cholangiocarcinoma (CCA) remains unknown. Our data show that ANRIL knockdown greatly inhibited CCA cell proliferation and migration in vitro and in vivo. According to the results of RNA sequencing analysis, ANRIL knockdown dramatically altered target genes associated with the cell cycle, cell proliferation, and apoptosis. By binding to a component of the epigenetic modification complex enhancer of zeste homolog 2 (EZH2), ANRIL could maintain lysine residue 27 of histone 3 (H3K27me3) levels in the promoter of ERBB receptor feedback inhibitor 1 ( ERRFI1), which is a tumor suppressor gene in CCA. In this way, ERRFI1 expression was suppressed in CCA cells. These data verified the key role of the epigenetic regulation of ANRIL in CCA oncogenesis and indicate its potential as a target for CCA intervention.

          Abstract

          ANRIL can adjust the proliferation and migration of cholangiocarcinoma (CCA) cells in vitro. Mechanistic investigations indicated that ANRIL could inhibit the expression of ERRFI1 by directly binding to EZH2, which mediated H3K27me3 in the promoter region of ERRFI1, thus accelerating CCA tumorigenesis.

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          Most cited references49

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          Long noncoding RNA as modular scaffold of histone modification complexes.

          Long intergenic noncoding RNAs (lincRNAs) regulate chromatin states and epigenetic inheritance. Here, we show that the lincRNA HOTAIR serves as a scaffold for at least two distinct histone modification complexes. A 5' domain of HOTAIR binds polycomb repressive complex 2 (PRC2), whereas a 3' domain of HOTAIR binds the LSD1/CoREST/REST complex. The ability to tether two distinct complexes enables RNA-mediated assembly of PRC2 and LSD1 and coordinates targeting of PRC2 and LSD1 to chromatin for coupled histone H3 lysine 27 methylation and lysine 4 demethylation. Our results suggest that lincRNAs may serve as scaffolds by providing binding surfaces to assemble select histone modification enzymes, thereby specifying the pattern of histone modifications on target genes.
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            Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene.

            A 42 kb region on human chromosome 9p21 encodes for three distinct tumor suppressors, p16(INK4A), p14(ARF) and p15(INK4B), and is altered in an estimated 30-40% of human tumors. The expression of the INK4A-ARF-INK4B gene cluster is silenced by polycomb during normal cell growth and is activated by oncogenic insults and during aging. How the polycomb is recruited to repress this gene cluster is unclear. Here, we show that expression of oncogenic Ras, which stimulates the expression of p15(INK4B) and p16(INK4A), but not p14(ARF), inhibits the expression of ANRIL (antisense non-coding RNA in the INK4 locus), a 3.8 kb-long non-coding RNA expressed in the opposite direction from INK4A-ARF-INK4B. We show that the p15(INK4B) locus is bound by SUZ12, a component of polycomb repression complex 2 (PRC2), and is H3K27-trimethylated. Notably, depletion of ANRIL disrupts the SUZ12 binding to the p15(INK4B) locus, increases the expression of p15(INK4B), but not p16(INK4A) or p14(ARF), and inhibits cellular proliferation. Finally, RNA immunoprecipitation demonstrates that ANRIL binds to SUZ12 in vivo. Collectively, these results suggest a model in which ANRIL binds to and recruits PRC2 to repress the expression of p15(INK4B) locus.
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              The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome.

              Many large noncoding RNAs (lncRNAs) regulate chromatin, but the mechanisms by which they localize to genomic targets remain unexplored. We investigated the localization mechanisms of the Xist lncRNA during X-chromosome inactivation (XCI), a paradigm of lncRNA-mediated chromatin regulation. During the maintenance of XCI, Xist binds broadly across the X chromosome. During initiation of XCI, Xist initially transfers to distal regions across the X chromosome that are not defined by specific sequences. Instead, Xist identifies these regions by exploiting the three-dimensional conformation of the X chromosome. Xist requires its silencing domain to spread across actively transcribed regions and thereby access the entire chromosome. These findings suggest a model in which Xist coats the X chromosome by searching in three dimensions, modifying chromosome structure, and spreading to newly accessible locations.
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                Author and article information

                Contributors
                leiyang.53@163.com
                linmiao@njmu.edu.cn
                Journal
                Cancer Sci
                Cancer Sci
                10.1111/(ISSN)1349-7006
                CAS
                Cancer Science
                John Wiley and Sons Inc. (Hoboken )
                1347-9032
                1349-7006
                30 May 2020
                July 2020
                : 111
                : 7 ( doiID: 10.1111/cas.v111.7 )
                : 2297-2309
                Affiliations
                [ 1 ] Department of Oncology Affiliated Tumor Hospital of Nantong University Nantong China
                [ 2 ] Department of Pathology Zhejiang University School of Medicine Second Affiliated Hospital Hangzhou China
                [ 3 ] Department of Urology Second Affiliated Hospital of Nanjing Medical University Nanjing China
                [ 4 ] Department of Assisted Reproduction Shanghai Ninth Hospital Shanghai Jiao Tong University Shanghai China
                [ 5 ] Medical Centre for Digestive Diseases Second Affiliated Hospital of Nanjing Medical University Nanjing China
                Author notes
                [*] [* ] Correspondence

                Lei Yang, Department of Oncology, Affiliated Tumor Hospital of Nantong University, Nantong, Jiangsu, China.

                Email: leiyang.53@ 123456163.com

                Lin Miao, Medical Centre for Digestive Diseases, Second Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, China.

                Email: linmiao@ 123456njmu.edu.cn

                Author information
                https://orcid.org/0000-0001-5979-5088
                https://orcid.org/0000-0002-1114-0530
                Article
                CAS14447
                10.1111/cas.14447
                7385372
                32378752
                d8927f40-2b32-45d4-8b0f-e71d03c7cdab
                © 2020 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

                History
                : 10 December 2019
                : 28 April 2020
                : 30 April 2020
                Page count
                Figures: 7, Tables: 0, Pages: 13, Words: 6810
                Funding
                Funded by: Project of the peak of the six talents of Jiangsu Province
                Award ID: WSN‐018
                Funded by: Scientific Research Foundation for Health of Jiangsu Province
                Award ID: H201408
                Funded by: Project of Standard Diagnosis and Treatment of Key Disease of Jiangsu Province
                Award ID: BE2015722
                Categories
                Original Article
                Original Articles
                Carcinogenesis
                Custom metadata
                2.0
                July 2020
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.8.6 mode:remove_FC converted:28.07.2020

                Oncology & Radiotherapy
                anril,cholangiocarcinoma,epigenetic regulation,errfi1,long noncoding rna
                Oncology & Radiotherapy
                anril, cholangiocarcinoma, epigenetic regulation, errfi1, long noncoding rna

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