10
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Precise diagnosis of intracranial hemorrhage and subtypes using a three-dimensional joint convolutional and recurrent neural network

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Objectives

          To evaluate the performance of a novel three-dimensional (3D) joint convolutional and recurrent neural network (CNN-RNN) for the detection of intracranial hemorrhage (ICH) and its five subtypes (cerebral parenchymal, intraventricular, subdural, epidural, and subarachnoid) in non-contrast head CT.

          Methods

          A total of 2836 subjects (ICH/normal, 1836/1000) from three institutions were included in this ethically approved retrospective study, with a total of 76,621 slices from non-contrast head CT scans. ICH and its five subtypes were annotated by three independent experienced radiologists, with majority voting as reference standard for both the subject level and the slice level. Ninety percent of data was used for training and validation, and the rest 10% for final evaluation. A joint CNN-RNN classification framework was proposed, with the flexibility to train when subject-level or slice-level labels are available. The predictions were compared with the interpretations from three junior radiology trainees and an additional senior radiologist.

          Results

          It took our algorithm less than 30 s on average to process a 3D CT scan. For the two-type classification task (predicting bleeding or not), our algorithm achieved excellent values (≥ 0.98) across all reporting metrics on the subject level. For the five-type classification task (predicting five subtypes), our algorithm achieved > 0.8 AUC across all subtypes. The performance of our algorithm was generally superior to the average performance of the junior radiology trainees for both two-type and five-type classification tasks.

          Conclusions

          The proposed method was able to accurately detect ICH and its subtypes with fast speed, suggesting its potential for assisting radiologists and physicians in their clinical diagnosis workflow.

          Key Points

          • A 3D joint CNN-RNN deep learning framework was developed for ICH detection and subtype classification, which has the flexibility to train with either subject-level labels or slice-level labels.

          • This deep learning framework is fast and accurate at detecting ICH and its subtypes.

          • The performance of the automated algorithm was superior to the average performance of three junior radiology trainees in this work, suggesting its potential to reduce initial misinterpretations.

          Electronic supplementary material

          The online version of this article (10.1007/s00330-019-06163-2) contains supplementary material, which is available to authorized users.

          Related collections

          Most cited references21

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning

          Remarkable progress has been made in image recognition, primarily due to the availability of large-scale annotated datasets and deep convolutional neural networks (CNNs). CNNs enable learning data-driven, highly representative, hierarchical image features from sufficient training data. However, obtaining datasets as comprehensively annotated as ImageNet in the medical imaging domain remains a challenge. There are currently three major techniques that successfully employ CNNs to medical image classification: training the CNN from scratch, using off-the-shelf pre-trained CNN features, and conducting unsupervised CNN pre-training with supervised fine-tuning. Another effective method is transfer learning, i.e., fine-tuning CNN models pre-trained from natural image dataset to medical image tasks. In this paper, we exploit three important, but previously understudied factors of employing deep convolutional neural networks to computer-aided detection problems. We first explore and evaluate different CNN architectures. The studied models contain 5 thousand to 160 million parameters, and vary in numbers of layers. We then evaluate the influence of dataset scale and spatial image context on performance. Finally, we examine when and why transfer learning from pre-trained ImageNet (via fine-tuning) can be useful. We study two specific computer-aided detection (CADe) problems, namely thoraco-abdominal lymph node (LN) detection and interstitial lung disease (ILD) classification. We achieve the state-of-the-art performance on the mediastinal LN detection, and report the first five-fold cross-validation classification results on predicting axial CT slices with ILD categories. Our extensive empirical evaluation, CNN model analysis and valuable insights can be extended to the design of high performance CAD systems for other medical imaging tasks.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Brain tumor segmentation with Deep Neural Networks

            In this paper, we present a fully automatic brain tumor segmentation method based on Deep Neural Networks (DNNs). The proposed networks are tailored to glioblastomas (both low and high grade) pictured in MR images. By their very nature, these tumors can appear anywhere in the brain and have almost any kind of shape, size, and contrast. These reasons motivate our exploration of a machine learning solution that exploits a flexible, high capacity DNN while being extremely efficient. Here, we give a description of different model choices that we've found to be necessary for obtaining competitive performance. We explore in particular different architectures based on Convolutional Neural Networks (CNN), i.e. DNNs specifically adapted to image data. We present a novel CNN architecture which differs from those traditionally used in computer vision. Our CNN exploits both local features as well as more global contextual features simultaneously. Also, different from most traditional uses of CNNs, our networks use a final layer that is a convolutional implementation of a fully connected layer which allows a 40 fold speed up. We also describe a 2-phase training procedure that allows us to tackle difficulties related to the imbalance of tumor labels. Finally, we explore a cascade architecture in which the output of a basic CNN is treated as an additional source of information for a subsequent CNN. Results reported on the 2013 BRATS test data-set reveal that our architecture improves over the currently published state-of-the-art while being over 30 times faster.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Spontaneous intracerebral hemorrhage.

                Bookmark

                Author and article information

                Contributors
                marabout@139.com
                xiajun2003sz@aliyun.com
                Journal
                Eur Radiol
                Eur Radiol
                European Radiology
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0938-7994
                1432-1084
                30 April 2019
                30 April 2019
                2019
                : 29
                : 11
                : 6191-6201
                Affiliations
                [1 ]GRID grid.452847.8, Department of Radiology, , Shenzhen Second People’s Hospital, Shenzhen Second Hospital Clinical Medicine College of Anhui Medical University, ; Shenzhen, China
                [2 ]Department of Engineering, CuraCloud Corporation, Seattle, WA USA
                [3 ]GRID grid.12981.33, ISNI 0000 0001 2360 039X, School of Biomedical Engineering, , Sun Yat-Sen University, ; Guangzhou, Guangdong China
                [4 ]GRID grid.24516.34, ISNI 0000000123704535, Department of Radiology, Tongji Hospital, , Tongji University School of Medicine, ; Shanghai, China
                [5 ]Department of Radiology, Pingshan District People’s Hospital, Shenzhen, Guangdong China
                [6 ]GRID grid.440601.7, Department of Radiology, , Peking University Shenzhen Hospital, ; Shenzhen, Guangdong China
                [7 ]GRID grid.452847.8, Department of Radiology, , The First Affiliated Hospital of Shenzhen University, Health Science Center, Shenzhen Second People’s Hospital, ; Shenzhen, China
                Author information
                http://orcid.org/0000-0002-5689-0343
                Article
                6163
                10.1007/s00330-019-06163-2
                6795911
                31041565
                d8b319cd-a13e-4160-99b5-7147de9727d9
                © The Author(s) 2019

                Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 15 November 2018
                : 18 February 2019
                : 14 March 2019
                Funding
                Funded by: Science and Technology Planning Project of Guangdong Province
                Award ID: 2017A020215160
                Award Recipient :
                Funded by: Shenzhen Municipal Government
                Award ID: KQTD2016112809330877
                Award Recipient :
                Categories
                Imaging Informatics and Artificial Intelligence
                Custom metadata
                © European Society of Radiology 2019

                Radiology & Imaging
                brain,intracranial hemorrhage (ich),multislice computed tomography,3d imaging,algorithms

                Comments

                Comment on this article