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      Decreased Pattern Recognition Receptor Signaling, Interferon-Signature, and Bactericidal/Permeability-Increasing Protein Gene Expression in Cord Blood of Term Low Birth Weight Human Newborns

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          Abstract

          Background

          Morbidity and mortality rates of low birth weight (LBW) newborns at term are higher than rates in normal birth weight (NBW) newborns. LBW newborns are at greater risk to acquire recurrent bacterial and viral infections during their first few weeks of life possibly as an outcome of compromised innate immune functions. As adaptive immunity is in a naive state, increased risk of infection of LBW as compared to NBW newborns may reflect impairments in innate immunity.

          Methodology

          To characterize the increased susceptibility to infections in LBW newborns we used microarray technology to identify differences in gene expression in LBW newborns (n = 8) compared to NBW newborns (n = 4) using cord blood. The results obtained from the microarray study were validated on a larger number of samples using real time RT-PCR (LBW = 22, NBW = 18) and western blotting (LBW = 12, NBW = 12). The Interferome database was used to identify interferon (IFN) signature genes and ingenuity pathway analysis identified canonical pathways and biological functions associated with the differentially expressed genes in LBW newborns. ELISAs for IFNs and bactericidal/permeability-increasing protein were performed in both LBW and NBW newborns and in adults (LBW = 18, NBW = 18, Adults  = 8).

          Principal Findings

          Upon microarray analysis, we identified 1,391 differentially expressed genes, of which, 1,065 genes were down-regulated and 326 genes were up-regulated in the LBW compared to NBW newborns. Of note, 70 IFN-signature genes were found to be significantly down-regulated in LBW compared to NBW newborns. Ingenuity pathway analysis revealed pattern recognition receptors signaling including Toll-Like Receptors (TLRs) -1, -5, and -8 genes and IFN signaling as the most significantly impacted pathways. Respiratory infectious diseases were the most significantly affected bio-functions in LBW newborns.

          Conclusion and Significance

          Diminished PRRs, IFN-signature, and BPI gene expression raises the possibility that impairments in these pathways contribute to the susceptibility of LBW term infants to infection.

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          Author and article information

          Contributors
          Role: Editor
          Journal
          PLoS One
          PLoS ONE
          plos
          plosone
          PLoS ONE
          Public Library of Science (San Francisco, USA )
          1932-6203
          2013
          23 April 2013
          : 8
          : 4
          : e62845
          Affiliations
          [1 ]Department of Molecular and Human Genetics, Faculty of Science, Banaras Hindu University, Varanasi, India
          [2 ]Department of Pediatrics, Institute of Medical Sciences, Banaras Hindu University, Varanasi, India
          [3 ]Department of Biology, The University of Western Ontario, London, Ontario, Canada
          Centre d'Immunologie de Marseille-Luminy, CNRS-Inserm, France
          Author notes

          Competing Interests: The authors have declared that no competing interests exist.

          Conceived and designed the experiments: GR VVS AK. Performed the experiments: VVS SKC RR. Analyzed the data: GR VVS. Contributed reagents/materials/analysis tools: SMS AK. Wrote the paper: VVS GR.

          Article
          PONE-D-12-27559
          10.1371/journal.pone.0062845
          3633842
          23626859
          d915401c-deff-4906-99d6-37c902ebd162

          This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

          History
          : 8 September 2012
          : 28 March 2013
          Page count
          Pages: 14
          Funding
          This work was supported by a grant (grant No. BT/PR11274/GBD/27/149/2008) from Department of Biotechnology, New Delhi, India ( http://dbtindia.nic.in). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
          Categories
          Research Article
          Biology
          Genetics
          Gene Expression
          Gene Networks
          Molecular Cell Biology
          Signal Transduction
          Membrane Receptor Signaling
          Medicine
          Clinical Immunology
          Immunity
          Immune Defense
          Immune Deficiency
          Immunity to Infections
          Innate Immunity
          Immune Response
          Pediatrics
          Neonatology

          Uncategorized
          Uncategorized

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